Pairwise Alignments

Query, 382 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (270), Expect = 3e-28
 Identities = 89/350 (25%), Positives = 152/350 (43%), Gaps = 10/350 (2%)

Query: 12  LLMMFPQIMETIYSPALPDIAEHFAVPISAAAQTLSVYFVAFAIGVFCWGRLADVIGRRK 71
           LL M   +   +Y PA   I        S  A TL+ +    AIG   +G L D  G+R 
Sbjct: 20  LLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGLAIGQLAYGSLCDKFGKRN 79

Query: 72  AMLAGLVCYAIGSAFALLVSDFSLLLMARVLSAFGAAVGSVITQTMMRDSYSGEELAKVF 131
            ++AGL  +A+ S       + S+  + RV+ AFGA   +VI Q ++ + +   E  KVF
Sbjct: 80  TLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAVIWQALVMEKFDEGEARKVF 139

Query: 132 SVMGMSFGISPVIGLLLGSVLSAFWGYQGVFVVLMSSAIVLLFLSVKSLPETKPAHTQTI 191
           S +     +SP +  L+G+ +S  +G++ +F++L   AIV L L+  +    K + T++ 
Sbjct: 140 SSIMPLVALSPALAPLMGAWVSEQFGWRAIFIIL---AIVGLLLAAMTPALAKESRTRSQ 196

Query: 192 AIGELAIKMLSDRGIIKNTLLVAAFNLMWFSYFSLAPFMFEAQGLSTLIFGMSGLLLGFG 251
           +   L   +L +R    N  +  A +  +F Y +L P + +  G +    G+S +     
Sbjct: 197 SEPILVKNILKNRAFQNNVAIFGACSAAFFCYLTLWPAVMQHHGYAAAEIGLSFIPQTLA 256

Query: 252 AFLGSYFNQVLLGRCCTSPRLIRLASSIALVGGV--GIWLLQSTFIGLNNVYFLAPMLLI 309
             LG +  +  L     SP  I+   ++ + G V   + L   T +G   +  L     +
Sbjct: 257 FMLGGFACKKALH--SHSPEAIK---NMLITGFVVLSLVLFLLTQLGAGILAVLWVFAAL 311

Query: 310 VIAYGIAIPNILSSALAGYRTYAGSAGALFGLFYYILLGAGLGVVGLINH 359
               G   P +++ ALA +   A  A          +       V LI H
Sbjct: 312 AAINGAVYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIAH 361