Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1018 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  609 bits (1570), Expect = e-178
 Identities = 355/1029 (34%), Positives = 591/1029 (57%), Gaps = 34/1029 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G+ +F  L++R+ P +ES ++TV+T+Y GA+A  ++
Sbjct: 1    MAFTDPFIRRPVLASVISLLIVLLGMQAFNSLTIRQYPQMESALITVTTAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    G+D +TS ++  +S I+V   +G +     +++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGVDYMTSVSQQNASVISVYARIGADTDRLYTELLSQANSVKNQLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            + A DPV++K        +Y++  S  +   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QAAEDPVLNKQAADSTALMYISFYSDQLSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P ++A   V+  D+  A+RK N  +  G+V+    V S+       TP+ F
Sbjct: 181  VFAMRLWLDPVKLAAYGVSAGDVNEAVRKYNFLSAAGEVKGQYVVTSINADTELKTPEAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              + ++T  D   + L DVA V +GA++ NS    DGI ++ +G+     ANPL V +EV
Sbjct: 241  AAIPLKTQGDSR-VLLGDVARVEMGAESYNSISSFDGIPSVYIGIKGTPSANPLDVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
               + +I+  LP G    + +D+T FI  SI+EV  TL     +V++V+++F+G +R  L
Sbjct: 300  RAIMPQIEAQLPPGLKASIAYDATEFIQASIDEVVKTLAEAAVIVIVVVFLFLGSLRTVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S+I         GYSINLLTL+A++LAIGLVVDDAIVVVENI  HIE+G+ P
Sbjct: 360  IPVVTIPLSMIGVMFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGKSP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA  G RE+   VV  T  L  V+ PI F++G+ G LF EF++ LA +VL S ++ALT
Sbjct: 420  FQAAIDGAREIAMPVVTMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAVLISGVVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFR---LLAPLVILACIG 537
            L+P++ SKLL+    P+ F   +D  F R+++ Y   +   +  R   L+  +++LA I 
Sbjct: 480  LSPMMCSKLLRHEENPSGFAHRLDELFERLKQRYQRALHGTLNTRPVVLVFAVLVLALIP 539

Query: 538  GSVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSF 597
                L+    ++LAP+ED+G+++      +       TAN+D +       L   + +SF
Sbjct: 540  A---LLMFTESELAPEEDQGIVFMMASAPK-------TANLDYLNAYTDQFL--EIFKSF 587

Query: 598  SVQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPM 651
                  F   G  G Q+G     L+ W+ R  +  + L  +   L  +P + +     P 
Sbjct: 588  PEYYSWFQINGFDGVQSGIGGFLLKPWDERERSQMEILPEVQAKLDRLPGLQIFGFNLPS 647

Query: 652  MPGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTV 710
            +PG  G+   P QFV+   +DY  L +  + ++++A  S      D+D A   PE++V +
Sbjct: 648  LPG-TGEGL-PFQFVINTANDYETLLQVTERIRKRAEESGKFAFLDVDLAFDKPEIVVEI 705

Query: 711  DKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYM 770
            D+E+AA++G+S++++  TL  +LG  +   +   G  Y V  + +    +N   LS  Y+
Sbjct: 706  DREKAAQMGVSMEELGLTLSTLLGEGEINRFTIEGRSYKVIAQVERAYRDNPDWLSNYYV 765

Query: 771  RSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGY---TLGEALTFLENKS 827
            R+ +G+++ L T+  + + A   +L    +     L A + +G+   ++GEA+  L+  +
Sbjct: 766  RNGQGQMLPLSTLIKVRDRARPTQLKQFQQ-----LNAAMIQGFPIVSMGEAIDTLQTIA 820

Query: 828  IELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPM 887
             E  P      Y G S+ + +  +++++ F LAL V +LVLAAQFESF +PLV++ TVP+
Sbjct: 821  REEAPDGFGFDYAGASRQYIQEGNALYMTFALALAVIFLVLAAQFESFRDPLVILVTVPL 880

Query: 888  GVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGLALDKAIIDA 946
             V G  + L +    +NIY+Q+G++ LIG+++K+GI+IVEFANQL R++GL+  +A+ +A
Sbjct: 881  SVCGALVPLFLGLSSMNIYTQVGLVTLIGLISKHGIMIVEFANQLRREQGLSRREAVEEA 940

Query: 947  STRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYR 1006
            +  RLRP+LMT   T+ G +PLI ++GAG+ SR  +G V+  GM+  T  TLFV+PA+Y 
Sbjct: 941  AAIRLRPVLMTTAATVFGMVPLIIASGAGAVSRFDIGLVIATGMSVGTLFTLFVLPAVYD 1000

Query: 1007 LISAATHSP 1015
            L++    SP
Sbjct: 1001 LVAQPDRSP 1009