Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1034 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  900 bits (2326), Expect = 0.0
 Identities = 476/1029 (46%), Positives = 679/1029 (65%), Gaps = 4/1029 (0%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M L+D+SVKRPV A V+SLLL  FGLV+F KL +RE P ++ PVV++ T+Y GASA+++E
Sbjct: 1    MILTDLSVKRPVFASVISLLLIAFGLVAFDKLPLREYPHIDPPVVSIETNYRGASASVVE 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
            S+IT+ +ED ++G+ GI  I+S++ +G S +T++F +  ++    +D+RD V+     LP
Sbjct: 61   SRITQLVEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSSMLNNLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            E+A+ P + K NG  E  +++NL S  M+  +LTDYA R L DRFS + GV+ + + GG 
Sbjct: 121  EEADPPEIRKANGGDEVIMWLNLVSDSMNTLELTDYANRYLADRFSAVDGVAMLRLGGGK 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               + + +  + +A RN+TV DI S LR EN+E P G V +     +VR +R + T +DF
Sbjct: 181  VYALRIWVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLERTFRTSEDF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              LV+    DG  + L DVA + +G++ E   F+ +    + LGV  QS AN L VA+ V
Sbjct: 241  ANLVLAQGDDGYLVKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAV 300

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
            +K VD+I   LP G  +   +DS+VFI+ SI EVY TL +   LV+LV+Y+F+G V A L
Sbjct: 301  NKLVDQINPTLPPGMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAML 360

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IPAVTVPVSL+  FI     GY+INLLTL+A+ILAIG+VVDDAIV++ENI   IE+GE P
Sbjct: 361  IPAVTVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGESP 420

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
            L+A++ G REV FAVVATT VLV VF+PI+F+EG +G LF EF+V ++ +V+FSSL+AL+
Sbjct: 421  LVASFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALS 480

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540
            L+P++ SKLL+   + +   + VD+G   +E  Y   +   IR  L   L ++A +G SV
Sbjct: 481  LSPMMCSKLLRPTSESSWLVKKVDKGMDWLEHTYRSSLERTIRHPLAVSLTVIAALGLSV 540

Query: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQ 600
            W+MQ+VP + AP+EDRG ++  V G +G SY  +   M+ VE+RLMP++  G ++   ++
Sbjct: 541  WMMQKVPQEFAPREDRGSMFLMVNGPQGASYEYIEKYMNEVEERLMPMVESGEIKRLLIR 600

Query: 601  APAFGGRAGD-QTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPMM-PGFRGQ 658
            AP   GR+ D   G  I+ LEDW  R   A   +  I   L D+  V   P+M  GF   
Sbjct: 601  APRGFGRSADFSNGMAIIVLEDWSARR-NAFDIMNDIRGKLSDLAGVQAFPIMRQGFGRG 659

Query: 659  SSEPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERAAEL 718
              +PVQFV+GG  Y EL +W  +L  +A  +P +   D DY ET P+  V +D++RAA+L
Sbjct: 660  VGKPVQFVIGGPSYEELAQWRDILMAKAAENPKLLALDHDYKETKPQFRVVIDRDRAADL 719

Query: 719  GISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAK-GEL 777
            G+S+  + +TLE MLG R  TT++  GEEYDV + GD    N   DLS IY+RS +  EL
Sbjct: 720  GVSISHIGRTLESMLGSRLVTTFMRDGEEYDVIIEGDRAKQNTAQDLSNIYVRSDRTREL 779

Query: 778  VTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLPKDISI 837
            + L  + H++E A A  L+  N+ ++IT++AN++ GY+LGEAL +L +     LP +  +
Sbjct: 780  IPLSNLVHVQEFADASSLNRYNRMRAITIEANLADGYSLGEALDYLNDTVRTYLPAEAVV 839

Query: 838  GYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLL 897
             Y G+S D++E+ +S++ VF LAL V +LVLAAQFES+I+P V+M TVP+   G  +GL 
Sbjct: 840  SYKGQSLDYQESGNSMYFVFVLALGVVFLVLAAQFESYIHPAVIMLTVPLATLGALIGLW 899

Query: 898  VTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKAIIDASTRRLRPILMT 957
            +T Q INIYSQIG+IML+G+  KNGILIVEFANQLRDRG+   +A++ AST+RLRPILMT
Sbjct: 900  LTGQTINIYSQIGIIMLVGLAAKNGILIVEFANQLRDRGVDFIEALLTASTQRLRPILMT 959

Query: 958  AFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATHSPGY 1017
              TT  GA+PL+ + GAG+E+R  +G VV  G+  AT  TL VIP  Y L +  + SP  
Sbjct: 960  GITTAAGAVPLVMAQGAGAETRFVIGVVVLSGIILATIFTLMVIPTAYALFARHSGSPDA 1019

Query: 1018 VEAKLEAAI 1026
            V  KLEA +
Sbjct: 1020 VAQKLEAEL 1028