Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1026 a.a., MexW/MexI family multidrug efflux RND transporter permease subunit from Pseudomonas sp. BP01

 Score =  597 bits (1539), Expect = e-174
 Identities = 359/1015 (35%), Positives = 569/1015 (56%), Gaps = 25/1015 (2%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D+ V+RPV+A+V+S L+ + GL +  KL +R+ P + S  +T+ST Y GASA +M+
Sbjct: 1    MKFTDLFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLASSTITISTEYPGASAELMQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              +T+ +   ++ + GID ++S+++ G S IT++ +L  + T+ +++    V + + RLP
Sbjct: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            E A DPVV    G      YV  +S  +   +L+DY  RV+E +FS I GV+ +   GG 
Sbjct: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L  EQMAGR VT  D+  A+R  N +   GQVR    +  ++        +DF
Sbjct: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240

Query: 241  DYLVVRTASDGTPIY-LKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQE 299
              L++R  +DGT +  L+DV  V + A    ++   DG   + LG+      NPLV+ + 
Sbjct: 241  RELIIR--NDGTDLVRLRDVGTVELSAAATPTSATMDGKPAVHLGLFPTPAGNPLVIVEG 298

Query: 300  VHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRAT 359
            + + + +IQ  LP G  + + +++  FID SI+EV  TL     +VVLV+++ +G +R+ 
Sbjct: 299  IRQLLPQIQQTLPPGVKVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSV 358

Query: 360  LIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEE 419
            LI  V +P+S++ A     +FG+S+NLLTL+A++LAIGLVVDDAIVVVEN+  HIE+G  
Sbjct: 359  LIAVVAIPLSMLGAAGLMLLFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGRS 418

Query: 420  PLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIAL 479
            P+ AA  G RE+   V+A T  L  V+ PI  M G+ G LF EF++ LA +V+ S ++AL
Sbjct: 419  PVAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVAL 478

Query: 480  TLTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGS 539
            TL+PV+SS LL+   +        DR FA +   Y   + +++  R ++  V L      
Sbjct: 479  TLSPVMSSLLLQPGQQHGAMANRADRLFAALTGAYGRVLAYSLAHRWISAGVALLVCLSL 538

Query: 540  VWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSY---NRMTANMDIVEDRLMPLLGQGVLRS 596
             WL      +LAP ED+  +   +K  +  S     R    +D V   +       ++  
Sbjct: 539  PWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIING 598

Query: 597  FSVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPM----M 652
                A +FGG          + L  W+ R  +A Q    + +A+ DI    +       +
Sbjct: 599  TDGPAASFGG----------INLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASL 648

Query: 653  PGFRGQSSEPVQFVL-GGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVD 711
            PG  G    PVQ VL    DY EL++  +VLK++A  S +    D D     P + V VD
Sbjct: 649  PGSSG--GLPVQMVLRSAQDYPELYQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVD 706

Query: 712  KERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMR 771
            + +AA LGIS+  + ++L V++G +    +   G  YDV  +  ++   +   L++ Y+R
Sbjct: 707  RAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLSPAALNRQYVR 766

Query: 772  SAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELL 831
            +  G LV L TV H++   +  RL   ++Q + TL+A  + G ++G A+ FLE  S E L
Sbjct: 767  AEDGSLVPLATVVHLDLEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLSAE-L 825

Query: 832  PKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFG 891
            P   S  +  ES+ + +   ++   F  AL+V YLVLAAQ+ES ++PL+++ TVP+ + G
Sbjct: 826  PPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICG 885

Query: 892  GFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GLALDKAIIDASTRR 950
              L L +    +NIY+QIG++ LIG+++K+GIL+VEFAN+++ R  L    AI+ A+  R
Sbjct: 886  ALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVEFANEIQVRDNLDRAAAIVRAAQIR 945

Query: 951  LRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMY 1005
            LRP+LMT      G +PL+F++GAG+ SR  +G V+  GM   T  TLFV+P +Y
Sbjct: 946  LRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIY 1000