Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1014 a.a., multidrug efflux RND transporter permease subunit from Pseudomonas sp. BP01

 Score =  614 bits (1583), Expect = e-179
 Identities = 359/1025 (35%), Positives = 600/1025 (58%), Gaps = 32/1025 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G  ++ KL +R+ P +E+ ++TV+T+Y GA+A  ++
Sbjct: 1    MAFTDPFIRRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    GID +TS +R   S I++   +G +     +++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            +D+ DPV+SK+       +YV+  S+ M   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QDSEDPVLSKEAADASALMYVSFYSTEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + + P ++AG  ++ TD+T+A+R+ N  +  G+V+ +  V S+       + + F
Sbjct: 181  VFAMRIWIDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSINASTELKSAEAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              L V+T+ D   + L DVA V +GA+N ++    DG  ++ +G+     ANPL V +EV
Sbjct: 241  AALPVKTSGDSR-VLLGDVARVVMGAENYDTVSSFDGTPSVYIGIKATPAANPLEVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             + + +++  LP    + + +D+T+FI  SI+EV  TL     +V++V+++F+G +R+ L
Sbjct: 300  RRIMPELESQLPSALKVSIAYDATLFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S+I       M GYS+NLLTL+A++LAIGLVVDDAIVVVENI  H+E+G+ P
Sbjct: 360  IPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA +G RE+   VV+ T  L  V+ PI F+ G+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYH--VGVTHAIRFRLLAPLVILACIGG 538
            L+P++ + LL+    P+     +D  F R++  Y   +  T   R  +L   VI+ C+  
Sbjct: 480  LSPMMCALLLRQEQNPSGLAHRLDLLFERLKVRYQRLLHATLDSRPVVLVFAVIVLCL-- 537

Query: 539  SVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVE---DRLMPLLGQGVLR 595
               L++    +LAP ED+GV++         S +   AN+D +    D+  PL      +
Sbjct: 538  IPVLLKFTQNELAPNEDQGVIFMM-------SSSPQPANLDYLNAYTDQFTPL-----FK 585

Query: 596  SFSVQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----R 649
            +F     +F   G  G QTG     L+ W  R  T  + L ++   L++I  + +     
Sbjct: 586  AFPEYYSSFQINGFNGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEIGGLQIFGFNL 645

Query: 650  PMMPGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIV 708
            P +PG  G+   P QFV+    DY  L + AQ +K +A AS      D+D A   PE++V
Sbjct: 646  PSLPG-TGEGL-PFQFVINTAGDYPALLEVAQRIKTRAQASGKFAFLDIDLAFDKPEVVV 703

Query: 709  TVDKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQI 768
             +D+ +AA++G+S+D +  TL  +LG  +   +   G  Y V  + +    +N G L+  
Sbjct: 704  DIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNY 763

Query: 769  YMRSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSI 828
            Y+++ +G+L+ L T+  + + A  ++L+   +  S  ++       +LGEAL  +++ + 
Sbjct: 764  YVKNEQGQLLPLSTLITLTDRARPRQLNQFQQLNSAIIQG--VPMVSLGEALKTVQDIAR 821

Query: 829  ELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMG 888
            E  P+  +  Y G ++ + +  S++++ FGLAL + +LVLAAQFESF +PLV++ TVP+ 
Sbjct: 822  EEAPEGFAFDYAGVARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLS 881

Query: 889  VFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGLALDKAIIDAS 947
            + G  L L +    +NIY+Q+G++ LIG+++K+GILIVEFANQLR +RGL++  AI +A+
Sbjct: 882  ICGALLPLFLGISSMNIYTQVGLVTLIGLISKHGILIVEFANQLREERGLSVRDAIEEAA 941

Query: 948  TRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRL 1007
              RLRP+LMT    + G +PLI +TGAG+ SR  +GTV+  GM+  T  TLFV+P +Y L
Sbjct: 942  AIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGTVIATGMSIGTLFTLFVLPCIYTL 1001

Query: 1008 ISAAT 1012
            ++  T
Sbjct: 1002 LAHKT 1006