Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1050 a.a., efflux RND transporter permease subunit from Parabacteroides merdae CL09T00C40

 Score =  511 bits (1317), Expect = e-149
 Identities = 328/1042 (31%), Positives = 560/1042 (53%), Gaps = 42/1042 (4%)

Query: 5    DVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIMESQIT 64
            ++ ++RP+++ V+S+++   GL++ T L + + PD+  P VTV+  Y+GA+A +M   + 
Sbjct: 3    EIFIRRPILSGVISVVIVFLGLLAITSLPITQFPDIVPPSVTVTARYTGANADVMAKTVA 62

Query: 65   KTLEDELTGISGIDEITST-TRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLPEDA 123
              LE  + G+ G+  +T+  T +G S  T+ F +G +      +V++ V      LPE+ 
Sbjct: 63   TPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVTTVLDELPEEV 122

Query: 124  NDPVVSKDNGSGEPSVYVNLSSSVMDRTQ--LTDYAQRVLEDRFSLISGVSSISISGGLY 181
                V  +       +Y+N+ S+    T+  + ++A   +      I GV  + I G   
Sbjct: 123  IRAGVITEKEVNSMLMYLNIMSTDSSHTEKFVYNFADINILRELKRIDGVGFVEIMGSRD 182

Query: 182  KVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQ--VRNDTTVMSVRTKRLYY---- 235
              M V L P ++A  N++  ++T+A+R +NIE   G+  + +D     ++    Y     
Sbjct: 183  YAMRVWLNPNRLAAYNMSPQEVTAAIRSQNIEAAPGKTGISSDKIPQQLQYVLQYSGKFS 242

Query: 236  TPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLV 295
            TP+++  +V++   DG+ + LKDVA +   +++ N    +DG  + S+ +  +  +N   
Sbjct: 243  TPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMISMTDGKPSASIMIKQRPGSNARE 302

Query: 296  VAQEVHKEVDKIQD--FLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFI 353
            V Q +  ++++I++  F P G    + +D + F+D SI+ V  TL     LV +V+Y+F+
Sbjct: 303  VIQNIKAKMEEIKESSFAP-GMDYNISYDVSRFLDASISVVLRTLLEAFLLVFIVVYLFL 361

Query: 354  GQVRATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHH 413
               R+TLIPA+ VPVSL+  F    M G+SIN+LTL AL+LAIG+VVD+AIVVVE +  H
Sbjct: 362  QDFRSTLIPAIAVPVSLVGTFFFMQMLGFSINMLTLFALVLAIGIVVDNAIVVVEAV--H 419

Query: 414  IEKGEE---PLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVS 470
            ++   E   P  A     RE+G A++A T V+  VF+P+ FM G VG+ + +FS+ LAV+
Sbjct: 420  VKMHNEKLPPAKATEAAIREIGGAIIAITLVMSAVFVPVGFMSGTVGIFYRQFSLTLAVA 479

Query: 471  VLFSSLIALTLTPVLSSKLLKA-----NVKPNRFNRFVD---RGFARMEKLYHVGVTHAI 522
            ++ S + ALTL+P L + +LK       VK +   RF D   + +  +E+ Y + +   +
Sbjct: 480  IVISGVNALTLSPALCALMLKPVSHDKKVKKSLLARFFDGFNKRYDHLERRYKINLRLFL 539

Query: 523  RFRLLA-PLVILACIGGSVWLMQQV-PAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDI 580
              R L    +I+ C+  + W M  V P+   P ED+G++Y  V    G +  R  A +  
Sbjct: 540  NRRFLTYASLIIFCL--ATWGMTFVLPSGFIPNEDQGMIYVNVDAPPGATLERSEAALSK 597

Query: 581  VEDRLMPLLGQ---GVLRSFSVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIIS 637
            V+  L+PL        L  +S+     G       G  ++ L+ W  R  TA++ + + +
Sbjct: 598  VQAALLPLEEVETVSTLAGYSLMTETEGA----SFGMGMINLKPWNEREQTAEELMRVYA 653

Query: 638  KALKDIPDVMVR----PMMPGFRGQSSEPVQFV-LGGSDYAELFKWAQVLKEQANASPMM 692
              +  I D  ++    P +PGF   S   ++        +AEL + A+    + NA P +
Sbjct: 654  DRVSHIKDADIQFFLPPTVPGFGNASGFELRLQDKTAGTFAELDEVAKSFVAKLNADPRL 713

Query: 693  EGADLDYAETTPELIVTVDKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYL 752
             G    +    P+ ++ VD  +AA+LGI V++  +TL+  +G    + +V  G+ Y V L
Sbjct: 714  SGVTSGFNPNFPQYLLRVDLAKAAKLGIDVNESMETLQSYVGSFYSSNFVRFGQMYKVML 773

Query: 753  RGDENSFNNVGDLSQIYMRSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISK 812
            +       N  DL  +Y ++ +G +V       +E V    +++  N   S  +    + 
Sbjct: 774  QAAPEYRMNPEDLFGLYAKNKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEQAP 833

Query: 813  GYTLGEALTFLENKSIELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQF 872
            G + GEAL  +E  + E+LP+   I ++G +++ KE+     ++F + L+  YL+LAAQ+
Sbjct: 834  GVSSGEALEAVEEIAAEVLPRGYDIEWSGVAREEKESGGQSLVIFAICLVFVYLLLAAQY 893

Query: 873  ESFINPLVVMFTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQL 932
            ES + PL V+ ++P GVFG FL L       NIY+Q+ ++MLIG++ KN ILI+E ANQ 
Sbjct: 894  ESLLLPLPVILSLPAGVFGSFLLLYAVGLENNIYAQVALVMLIGLLGKNAILIIEVANQC 953

Query: 933  RDRGLALDKAIIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAF 992
            R  G+++  A I  +T RLRPILMT+F  + G IPL  ++GAG+    ++GT    GM  
Sbjct: 954  RKEGVSIMGAAIQGATSRLRPILMTSFAFISGLIPLAVASGAGALGNRSIGTAAAGGMLI 1013

Query: 993  ATFVTLFVIPAMYRLI-SAATH 1013
             TFV +F+IP +Y +  S AT+
Sbjct: 1014 GTFVGIFLIPGLYVIFESLATY 1035