Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1018 a.a., multidrug efflux RND transporter permease subunit MexW from Pseudomonas aeruginosa PA14

 Score =  623 bits (1607), Expect = 0.0
 Identities = 369/1034 (35%), Positives = 594/1034 (57%), Gaps = 34/1034 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G+ +F+KL +RE P +E+ ++TV+T Y+GA+A  ++
Sbjct: 1    MAFTDPFIRRPVLASVVSLLIVLLGMQAFSKLVIREYPQMENALITVTTLYAGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    GID +TS +R   S I++   +G N    V+++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNEVKSQLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
             DA DPV+ K+       +Y++  S  M+  Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  PDAEDPVLQKEAADASALMYISFYSEQMNNPQITDYLSRVIQPKLATLPGIAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P +MA   VT  +I  A+++ N     G+V+    V SV       +P+ F
Sbjct: 181  VFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNASTDLKSPQAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              + V+T  D   + + DVA V +GA + ++    +GI ++ +G+     ANPL V +EV
Sbjct: 241  AAIPVKTDGDRR-VLMGDVARVELGAASYDAISSFNGIPSVYIGIKGTPSANPLDVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
              ++ ++++ LP    + + +D+T FI  SI+EV  TL     +V++V+++F+G  R+ L
Sbjct: 300  RAKMPELEEQLPPNLKVSIAYDATRFIQASIDEVVKTLGEAVLIVIVVVFLFLGAFRSVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S+I         GYSINLLTL+A++LAIGLVVDDAIVVVENI  HIE+G+ P
Sbjct: 360  IPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKPP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA +G RE+   VV+ T  L  V+ PI F+ G+ G LF EF+  LA +V+ S ++ALT
Sbjct: 420  FEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVIISGIVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFR---LLAPLVILACIG 537
            L+P++ S+LL+    P+     +D  F  +++ Y   +   +  R   L+  +++LA I 
Sbjct: 480  LSPMMCSRLLRHEENPSGLAHRLDLIFEGLKRRYQRALHGTLDTRPVVLVFAVLVLALI- 538

Query: 538  GSVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSF 597
                L+     +LAP+ED+G+++      +       TAN+D +         +G+ RSF
Sbjct: 539  --PVLLMFTKKELAPEEDQGIVFLMTNSPQ-------TANLDYLNRYTAEF--EGIFRSF 587

Query: 598  SVQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPM 651
                 AF   G  G Q G   M L+ W+ R  +  + L  +   L +IP V +     P 
Sbjct: 588  PEYYSAFQINGYNGVQAGIGGMLLKPWDEREKSQMELLHAVQAKLNEIPGVQIFAFNLPS 647

Query: 652  MPGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTV 710
            +PG  G+   P QFVL   +DY  L + AQ +K++A+ S      DLD A   PEL+V +
Sbjct: 648  LPG-TGEGL-PFQFVLNTANDYESLLQVAQRVKQRASESGKFAFLDLDLAFDKPELVVDI 705

Query: 711  DKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYM 770
            D+E+AA++G+S+ D+   L  +LG  +   +   G  Y V  + +    +N G L   Y+
Sbjct: 706  DREKAAQMGVSMQDLGVALASLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLGSYYV 765

Query: 771  RSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGY---TLGEALTFLENKS 827
            +S  G+LV L T+    E A  ++L+   +     L + I  G+   ++GEA+  ++  +
Sbjct: 766  KSRNGQLVALSTLIETHERARPRQLNQFQQ-----LNSAIISGFPIVSMGEAIETVQQIA 820

Query: 828  IELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPM 887
             E  P+  ++ Y G S+ + +  S++ + FGLAL + +LVLAAQFESF +PLV+M TVP+
Sbjct: 821  REEAPRGFAVDYAGASRQYVQEGSALLVTFGLALAIIFLVLAAQFESFRDPLVIMVTVPL 880

Query: 888  GVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGLALDKAIIDA 946
             + G  + L +    +NIY+Q+G++ LIG+++K+GILIVEFANQLR ++GL   +AI  A
Sbjct: 881  SICGALIPLFLGVSSLNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLGRREAIEQA 940

Query: 947  STRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYR 1006
            +  RLRP+LMT    ++G IPLI +TGAG+ SR  +G V+  GM+  T  TLFV+P +Y 
Sbjct: 941  AAIRLRPVLMTTAAMVLGVIPLILATGAGAVSRFDIGIVIATGMSVGTLFTLFVLPCIYT 1000

Query: 1007 LISAATHSPGYVEA 1020
            L++     PG  +A
Sbjct: 1001 LVARPDAPPGVTQA 1014