Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1042 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  921 bits (2381), Expect = 0.0
 Identities = 490/1029 (47%), Positives = 693/1029 (67%), Gaps = 4/1029 (0%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M L+D+SVKRPV A V+S+LL  FGLVSF KL +RE P+++ P+V+V T+Y GASAA++E
Sbjct: 1    MILTDLSVKRPVFASVISMLLIAFGLVSFDKLPLREYPNIDPPIVSVQTNYRGASAAVVE 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
            S+IT+ +ED ++G+ GI  I S++ +G S +T++F +G ++    +DVRD ++     LP
Sbjct: 61   SRITQLVEDRISGVEGIRNINSSSSDGRSSVTLEFDVGRDIEAAANDVRDRISGLLNNLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            E+A+ P V K NG  E  +++NL S  M+  QLTDYA+R L DRFS+I GV++I I GG 
Sbjct: 121  EEADPPEVQKANGGDEVIMWLNLVSDQMNTLQLTDYARRYLVDRFSVIDGVANIRIGGGK 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M V +  + +A RN+TV+DI S LR EN+E P G V +     +VR +R + T +DF
Sbjct: 181  VYAMRVWIDRQALAARNLTVSDIESVLRSENVELPAGSVESQDRHFTVRLERTFKTAEDF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
            + LV+    DG  I L DVA V +G++ E  TF+ +    + LG+  QS +N L VA+  
Sbjct: 241  NNLVLAEGEDGYLIKLGDVARVEIGSEEERITFRGNREAMIGLGISKQSTSNTLEVARAA 300

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
            +  VDKI   LP G  +   +DS+VFI+ SI EVY TL++   LV++V+Y+F+G VRA L
Sbjct: 301  NALVDKINPTLPAGMEIKRSYDSSVFIEASIKEVYQTLFIAMFLVIVVIYLFLGSVRAML 360

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IPA+TVPVSL++ FI     GY+INLLTL+A+ILAIG+VVDDAIVV+ENI   IE+G+ P
Sbjct: 361  IPALTVPVSLMATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIHRRIEEGDSP 420

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
            L AAY G+REV FAVVATT VLV VF+PI+F+EG +G LF EF+V ++ +V+FSSL+ALT
Sbjct: 421  LKAAYLGSREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSLVALT 480

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540
            L+P++ SKLLK   +     R +D G   +   Y   +  A+    +   +++  +G S 
Sbjct: 481  LSPMMCSKLLKPAGQDPWLVRKIDAGMNWLSAGYRATLKRAMIHPFIVSSLVVIALGLSG 540

Query: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQ 600
            +LM +VP + APQEDRG ++  V G +G S+  ++  MD +E+RLMPL+  G ++   ++
Sbjct: 541  YLMTKVPQEFAPQEDRGSMFLIVNGPQGASFEYISPYMDEIENRLMPLVDSGDIKRLLIR 600

Query: 601  AP-AFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPMMPGFRGQS 659
            AP  FG  A    G  I+ LEDW  R  +A + +G I   L D+  V   P+M    G+ 
Sbjct: 601  APRGFGRSANFSNGMAIIVLEDWADRR-SAFEIIGDIRARLSDLAGVRAFPVMRQAFGRG 659

Query: 660  -SEPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERAAEL 718
              +PVQFVLGG  Y EL KW  +L E+A  +P + G D DY ET P+L V +DK+RAA+L
Sbjct: 660  VGKPVQFVLGGPSYEELAKWRDILLEKAKENPNLVGLDHDYQETKPQLRVVIDKDRAADL 719

Query: 719  GISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAKG-EL 777
            G+S+  + +TLE MLG R  TT++  GEEYDV + G+ ++ N   DLS IY+RS +  EL
Sbjct: 720  GVSISHIGRTLESMLGSRLVTTFMRDGEEYDVIIEGNRDNQNTASDLSNIYVRSDRSREL 779

Query: 778  VTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLPKDISI 837
            + L  +  +EE A A +L+  N+ ++IT++AN++ GY+LGEAL +L N +   LP +  I
Sbjct: 780  IPLANLVSVEEFADASQLNRYNRMRAITIEANLADGYSLGEALDYLNNLAYTYLPAEAVI 839

Query: 838  GYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLL 897
             Y G+S D++E+ SS++ VF LAL + +LVLAAQFES+I+P+V+M TVP+   G  +GL 
Sbjct: 840  SYKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIMLTVPLATLGALIGLW 899

Query: 898  VTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKAIIDASTRRLRPILMT 957
            VT Q +NIYSQIG+IML+G+  KNGILIVEFANQLRD+G+  D AII A+++RLRPILMT
Sbjct: 900  VTGQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGIEFDTAIIQAASQRLRPILMT 959

Query: 958  AFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATHSPGY 1017
              TT  GAIPL+ + GAG+E+R  +G VV  G+  ATF TL VIP  Y LI+  T SP  
Sbjct: 960  GITTAAGAIPLVLAQGAGAETRFVIGVVVLSGIILATFFTLLVIPVAYGLIARNTGSPEE 1019

Query: 1018 VEAKLEAAI 1026
            +  +L+A +
Sbjct: 1020 ISQRLDAEL 1028