Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1029 a.a., multidrug resistance protein from Marinobacter adhaerens HP15

 Score =  597 bits (1539), Expect = e-174
 Identities = 348/1019 (34%), Positives = 578/1019 (56%), Gaps = 17/1019 (1%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D+ + RPV+A V+SLL+ + G  +  ++ +R+ P++ES  VTV+T+Y GAS+ +++
Sbjct: 1    MRFTDIFIHRPVLATVVSLLILLLGARAAMEMEIRQYPELESTTVTVTTAYPGASSDLIK 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT  L+  +   SGID +TST+  G+S I  K +L ++    +++++  VA  +  LP
Sbjct: 61   GFITTPLQQAIAEASGIDYLTSTSSQGTSTIEAKMVLNYDANAALAEIQAKVASQRNVLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
             +A DPV++   G     +Y+   S+ +   ++TDY  RV++ R   +SGV    + G  
Sbjct: 121  AEAQDPVITSTTGDSTALMYIAFYSNELAVPEITDYLTRVVQPRLQALSGVGKAELLGRK 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
            +  + V L PE++A  ++T  ++ + LR  N +   G  +   T +S+ +      P  F
Sbjct: 181  F-ALRVWLDPERLAAVDMTPQEVVAKLRANNYQAAVGNTKGTYTEISMTSDTDVADPDAF 239

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              LVV+  S+GT I L+D+A V +G++  +      G     + +     ANPL VA  V
Sbjct: 240  RNLVVKQ-SEGTQIRLQDIARVELGSETYDQLALYKGQPATYVAIELAPGANPLTVAGLV 298

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
              E+  I+  LP G  + + +D++ FI+ SINEV  TL     +V++V+++ +G VRA++
Sbjct: 299  KGELPDIESQLPSGLDVRLAYDASDFIEDSINEVIQTLLEAMIIVLVVVFLCLGSVRASI 358

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            +P+V VP+SLI       MFG+S+NLLTL++++LAIGLVVDDAI++VEN+  HIE+GE  
Sbjct: 359  VPSVAVPLSLIGGAFIMLMFGFSLNLLTLLSMVLAIGLVVDDAIIMVENVHRHIEQGESR 418

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA  G RE+   ++A T  LV V+ PI FM G+VG LFTEF+  LA +V+ S ++ALT
Sbjct: 419  FDAAINGAREMAVPIIAMTTTLVAVYAPIGFMGGLVGSLFTEFAFTLAGTVVISGIVALT 478

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540
            L+P+LS K+LK +  P +F   V++ F  +   Y   ++  ++ + +     +  +G   
Sbjct: 479  LSPMLSGKVLKPHGNPGKFENLVEKTFNGLAATYKSALSSLMQTKSVVVFFAVVVLGSIY 538

Query: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQ 600
            +++     +LAP ED+G+L+    G + ++ + +  + D +++R+  + G      F + 
Sbjct: 539  FMVSMSQNELAPTEDQGILFYQGLGPQTSTLDYLLEHGDEIQERMSTVPGYN--EDFMII 596

Query: 601  APAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPD----VMVRPMMPGFR 656
                 G  G    +   ++  W  R ++  +A   +   LK++      V  RP +PG  
Sbjct: 597  -----GITGPNAVFGGFKMAPWSEREISQFEAQPKLDAELKNVTGLQTAVFPRPSLPGSG 651

Query: 657  GQSSEPVQFVL-GGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERA 715
            G    P QFV+  G++Y +L + A  L  +A  S              P   + VD++R 
Sbjct: 652  G--GLPFQFVITTGNNYEQLDQVADELLGKAMGSGNFMFLQKSINFDRPITRINVDRDRV 709

Query: 716  AELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAKG 775
            A+LG+S+ DV Q+L  MLGG     +   G  Y V  + D+    +   L++ Y+R+  G
Sbjct: 710  ADLGLSMQDVGQSLSSMLGGGYINRFSMEGRSYQVIPQVDQQFRLDAQALNEYYIRADNG 769

Query: 776  ELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLPKDI 835
            ELV L +V    +       +  N+Q S+TL+  +  G   G A+ F+E  + E+ P+  
Sbjct: 770  ELVPLGSVVSFTQDVEPSNRTQFNQQNSLTLQGVVMPGVAAGTAMDFMEQTAAEVFPQGY 829

Query: 836  SIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLG 895
            +  YTG+++      S++ + F L+LLV YLVLAAQFES+ +P +++ +VPM V G    
Sbjct: 830  TYDYTGQTRQLATQGSALMVTFFLSLLVIYLVLAAQFESWRDPFIILVSVPMSVAGAMAF 889

Query: 896  LLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGLALDKAIIDASTRRLRPI 954
            +++    +NIY+Q+G+I LIG+V+KNGILIVEFANQL ++RGL    A+I+A+  RLRPI
Sbjct: 890  IVLGFATMNIYTQVGLITLIGVVSKNGILIVEFANQLQKERGLNKVDAVIEAAAIRLRPI 949

Query: 955  LMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATH 1013
            +MT+   +   +PL+ + G G+ESR A+G  +  G+   T  T+FV+PA Y L+    H
Sbjct: 950  IMTSLALIFAMVPLLIAIGPGAESRFAIGLTISAGLGIGTLFTIFVLPAFYILLGRDHH 1008