Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1031 a.a., Cation/multidrug efflux pump from Sphingomonas koreensis DSMZ 15582

 Score =  817 bits (2110), Expect = 0.0
 Identities = 454/1037 (43%), Positives = 660/1037 (63%), Gaps = 12/1037 (1%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M LSDVSV+RPV A VLS+LL + G+V+F  LSVRE PD + PVV+V T Y+GA+A+++E
Sbjct: 1    MQLSDVSVRRPVFAAVLSILLTIVGVVAFLSLSVREYPDTDPPVVSVETVYTGAAASVVE 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
            ++IT+ +E+ L+GI GI  ITS +R+GSS I+++F  G ++    +DVRD +      LP
Sbjct: 61   ARITQPIEEALSGIEGIQTITSRSRDGSSDISIEFRPGRDIDSAANDVRDRIGSVTEDLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            E+A  P V K +    P +++ +S     R +L+DY  R L DRFS I GV+ + + G  
Sbjct: 121  EEALAPEVRKVDADSSPILFLVVSRPGWSRLELSDYVDRNLVDRFSTIDGVARVFVGGEA 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M V L   ++A   +T  D+ +ALR +N+E P G++ +    +++R  R + + + F
Sbjct: 181  RPSMRVWLDANKLAAFQLTPADVETALRTQNVELPAGRIESQQQNVTLRVDRPFASAESF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              LVV    DG  + L D+A V  GA+N  +TF+ +G   + +G++ QS AN L VA   
Sbjct: 241  TRLVVGRGPDGYQVKLGDIAKVEQGAENPYTTFRMNGQSAVGMGIVRQSGANTLAVADAA 300

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             K    +   LPEG ++ V  D ++FI R+I  V++TL     LVVLV+++F+G  RATL
Sbjct: 301  KKTAAGLD--LPEGMTITVGSDDSLFIGRAIEGVWHTLAEAAVLVVLVIFLFLGSWRATL 358

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IPAVTVP+ L+ AF     FG+SINLLTL+AL+LAIGLVVDDAIVV+EN++H IE+GE P
Sbjct: 359  IPAVTVPICLLGAFAVLWAFGFSINLLTLLALVLAIGLVVDDAIVVLENVYHRIEEGEPP 418

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
            L+AA+KGTR+VGFAV++TT V+  VF+PI F+ G  GLLF E +V +  +V FS  +AL+
Sbjct: 419  LVAAFKGTRQVGFAVISTTLVVCAVFVPICFLAGQTGLLFRELAVAMIGAVAFSGFLALS 478

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540
            LTP+L SK+LK   +  RF  +VD  F ++E  Y   +  AI   L+  + +L  +G +V
Sbjct: 479  LTPMLCSKMLKKQER-GRFTGWVDDKFQKLENFYGRWLDKAINRPLIPMIGVLLFLGVAV 537

Query: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQ 600
                 + ++L P ED+GV    +   EGT +++M   +   +++L+PLL +G +R+   +
Sbjct: 538  GGFLTLQSELVPAEDQGVAQVQLSAPEGTGFDQMDRYVVQTQEKLLPLLNEGAVRTVISR 597

Query: 601  AP-AFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIP----DVMVRPMMPGF 655
             P  FG      +G  I+ L+ WE R  T QQ    I++ L + P    +  VR  +   
Sbjct: 598  TPGGFGASDDFNSGMFIVFLKPWEDRTTTTQQVAQQINRILVNEPAIRGNAQVRSALGRG 657

Query: 656  RGQSSEPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERA 715
            RGQ   P+ FVL G+ Y +L K    +   A  +P +   D DY ET P+L V VD  RA
Sbjct: 658  RGQ---PIGFVLAGTTYEDLAKARDRILAAAAQNPGIINLDSDYKETKPQLRVDVDTTRA 714

Query: 716  AELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAKG 775
             +LG+SV+DVSQ L+ +LG R+ +TYVDRGEEY V ++ D      + +LS I +R+  G
Sbjct: 715  GDLGVSVNDVSQALQTLLGSRRVSTYVDRGEEYRVIVQADAAGRATLANLSTIQVRARDG 774

Query: 776  ELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLPKDI 835
             LV L  +    EV+  + L   NK ++ITL   ++ GY+LGEALTFL+ ++    P+ I
Sbjct: 775  SLVPLSNLVTTREVSGPRDLGRFNKLRAITLSGAVAPGYSLGEALTFLQEQA-AASPEVI 833

Query: 836  SIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLG 895
            ++GY GES+ F E   SI +VFGL +L+ YLVLAAQFESF++P V++ TVP+ V GG LG
Sbjct: 834  AVGYRGESQAFVETGGSILLVFGLTILIVYLVLAAQFESFVHPGVIIMTVPLAVAGGVLG 893

Query: 896  LLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKAIIDASTRRLRPIL 955
            L V  + +N+YSQIG++ML+G+  KNGILIVEFANQLRD G ++ +AI  AS RRLR IL
Sbjct: 894  LAVMGKTLNLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGRSIAEAIRQASARRLRAIL 953

Query: 956  MTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATHSP 1015
            MT+     GA+PL+F++GAG+ +R A+G V+ FG+  AT +TLF+IP +Y  ++  T SP
Sbjct: 954  MTSIAMAAGAVPLMFASGAGAAARQAIGVVIVFGVILATMITLFLIPILYSRLAKWTGSP 1013

Query: 1016 GYVEAKLEAAIKAQELA 1032
              V  +LEAA+   + A
Sbjct: 1014 QAVSRELEAAMGEPQAA 1030