Pairwise Alignments

Query, 307 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., Transcriptional regulator, LysR family from Xanthomonas campestris pv. campestris strain 8004

 Score =  194 bits (493), Expect = 2e-54
 Identities = 114/304 (37%), Positives = 172/304 (56%), Gaps = 15/304 (4%)

Query: 1   MDRLEAAKVFVTIVERGSMIGAAEVLDMSRSMVTRYLSEMEEWSGARLLHRSTRRLSLTS 60
           MD L+A +VFV + ER     AA+ LD S + +TR ++ +E+  G RLL+R+TRR+SLTS
Sbjct: 1   MDTLDAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTS 60

Query: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLILPTVVRPYLAQYPQ 120
           AG      C +LL    ++ A   AQ+  P GLLR++       + L  ++  + A++PQ
Sbjct: 61  AGTAYYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQ 120

Query: 121 ASVNFHVSSQTVDLVAERIDMAIRITNELDPSLIARRLGECESVVCAAPRYLASHSPIIQ 180
             ++  +S + VD+V E  D+A+RIT +  P+LIAR+LG    V CAAP YLA       
Sbjct: 121 VELDLSLSDRLVDMVEEGFDVALRITRQPAPTLIARQLGTVRLVPCAAPAYLARAGTPQH 180

Query: 181 PEDLTRHNCLTYSY--FGDVMWRFTQINHLVTHPDGKSAGQQFNIPVKGNLSANDSMVVL 238
           P DL  H CL Y Y   GD + RF         PDG       ++ ++G L AN+  V+ 
Sbjct: 181 PADLAGHECLLYHYAPTGDDV-RF-------HGPDG-----DIDVRLRGGLRANNGHVLS 227

Query: 239 NATLAGEGIAMQPVWAVKSYLNSGELVPLLRDFKPQSLGVYGVYQSRKHMQPTLRVMMDM 298
            A +AG+G+ +QP +    ++ +G LV +L D+    +G+Y VY SR H+ P +R  +D 
Sbjct: 228 AAAVAGQGVVIQPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDY 287

Query: 299 LVAY 302
           LV +
Sbjct: 288 LVEH 291