Pairwise Alignments

Query, 555 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 636 a.a., COG0488: ATPase components of ABC transporters with duplicated ATPase domains from Pseudomonas fluorescens FW300-N2E2

 Score =  334 bits (856), Expect = 7e-96
 Identities = 190/518 (36%), Positives = 298/518 (57%), Gaps = 12/518 (2%)

Query: 21  ILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTEIEGEARPMPGLKIGYLPQEPKL 80
           +L  +S     G ++ ++G NG+GKS++++++ G     +G     PGLKIG LPQE  +
Sbjct: 18  LLDKVSWQIARGERVCIIGRNGTGKSSMMKLVKGDQKPDDGSVWRAPGLKIGELPQELPV 77

Query: 81  DPNQTVREAIEEAVSEAKNALKRLDEVYAAYAEPDADFDALAKEQGELEAIIQAQDAHNL 140
              +TV + + E +      L     + +     DAD D L   Q +LEA    +D   L
Sbjct: 78  ADERTVFDVVAEGLDGVGALLAEYHHL-SQNIVTDADLDKLMHVQHDLEA----RDGWRL 132

Query: 141 DNILERAANALRLPDWDEKIEVLSGGERRRVAICRLLLEKPEMLLLDEPTNHLDAESVAW 200
             +++   + L+LP  D+ +  LSGG RRRV + + L+ +P++LLLDEPTNHLD  ++AW
Sbjct: 133 QQLVDSTLSRLQLPA-DKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTNHLDIGAIAW 191

Query: 201 LEHFLQEYAGTVVAITHDRYFLDNAAGWILELDRGEGIPWEGNYSSWLEQKDARLKQESA 260
           LE  L+++ G V+ ITHDR FL N A  ILELDRG  I W G+Y+S+L  K+A L  E  
Sbjct: 192 LEEALKDFQGAVLFITHDRSFLQNLATRILELDRGGLIDWNGDYASFLVHKEAALAAEET 251

Query: 261 AESARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTNDYQKRNETNE--LFIPPGPR 318
           A +   K +A+E  W+RQG K R+++ + R+   + L     ++R  T +  + +    +
Sbjct: 252 ANALFDKKLAQEEVWIRQGIKARRTRNEGRVRALKALRVERSERRERTGKANIQLDTADK 311

Query: 319 LGDKVIEVNNLTKSY-GDRVLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDS 377
            G +V+ + N++ ++ G   LI + S  + +G  +G++GANG GK+TL +++ G   P +
Sbjct: 312 SGKQVMVLENVSFAHPGGPFLIKDFSMVLQRGDRIGLLGANGTGKTTLLKLMLGGLVPTN 371

Query: 378 GSIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRINNMEIPSRAYVGRFNFRGGD 437
           G +E G  + +A  +Q R  ++ + T+   ++ G+D + I+       +Y+G F F    
Sbjct: 372 GKVEEGTKIDVAYFDQLRHQLDLEKTVIDNVAEGRDFIDIDGQSRHVLSYLGDFLFSPQR 431

Query: 438 QQKIIGTLSGGERNRVHLAKLLQAGGNVLLLDEPTNDLDVETLRALEEAILEFPGCAMVI 497
            +  +  LSGGER R+ LAKL     N+L+LDEPTNDLDVETL  LEE +L F G  +++
Sbjct: 432 ARTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLLTFNGTVLMV 491

Query: 498 SHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYSAWLK 535
           SHDR FLD + T  L +  EG V  Y G Y +   WL+
Sbjct: 492 SHDRAFLDNVVTSTLVFEGEGLVREYVGGYQD---WLR 526



 Score =  103 bits (258), Expect = 2e-26
 Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 32/238 (13%)

Query: 323 VIEVNNLTKSYGDRVLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDSGSIEL 382
           +++ ++++ ++G   L+D +S+ + +G  V IIG NG GKS++ +++ G ++PD GS+  
Sbjct: 3   LLKFSDVSLAFGAMPLLDKVSWQIARGERVCIIGRNGTGKSSMMKLVKGDQKPDDGSVWR 62

Query: 383 GETVQLASVEQFRDSMNDKNTIWQEISGGQDIMR-------------INNMEIPSRAYVG 429
              +++  + Q    + D+ T++  ++ G D +              + + ++    +V 
Sbjct: 63  APGLKIGELPQ-ELPVADERTVFDVVAEGLDGVGALLAEYHHLSQNIVTDADLDKLMHVQ 121

Query: 430 R-FNFRGG----------------DQQKIIGTLSGGERNRVHLAKLLQAGGNVLLLDEPT 472
                R G                   K +  LSGG R RV LA+ L +  ++LLLDEPT
Sbjct: 122 HDLEARDGWRLQQLVDSTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPT 181

Query: 473 NDLDVETLRALEEAILEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEY 530
           N LD+  +  LEEA+ +F G  + I+HDR FL  +AT IL+  D G +  + G+Y  +
Sbjct: 182 NHLDIGAIAWLEEALKDFQGAVLFITHDRSFLQNLATRILEL-DRGGLIDWNGDYASF 238