Pairwise Alignments
Query, 555 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056
Score = 293 bits (749), Expect = 2e-83
Identities = 163/498 (32%), Positives = 285/498 (57%), Gaps = 9/498 (1%)
Query: 34 KIGVLGLNGSGKSTLLRIMAGIDTEIEGEARPMPGLKIGYLPQEPKLDPNQTVREAIEEA 93
++ ++G NG+GKSTL++++AG +G+ + M + + L Q+P + TV + +
Sbjct: 31 RVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRLEQDPPRNQAGTVFDYVSGG 90
Query: 94 VSEAKNALKRL-DEVYAAYAEP-DADFDALAKEQGELEAIIQAQDAHNLDNILERAANAL 151
+ LK D++ +P +++ + LA Q +LE A ++ ++ +L
Sbjct: 91 LQGIGEQLKIYQDQLDLVATDPSESNINKLAHIQEQLEV----SGAWRFEDRIKNVLGSL 146
Query: 152 RLPDWDEKIEVLSGGERRRVAICRLLLEKPEMLLLDEPTNHLDAESVAWLEHFLQEYAGT 211
+L D K+ LSGG +R+ A+ R L P++LLLDEPTNHLD ++ WLE FL+++ G+
Sbjct: 147 KL-DGHTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNHLDVTTIEWLEGFLKDFRGS 205
Query: 212 VVAITHDRYFLDNAAGWILELDRGEGIPWEGNYSSWLEQKDARLKQESAAESARQKTIAK 271
++ I+HDR F+ + A I++LDRG+ + G+Y ++L +K+ L+ E + K +A+
Sbjct: 206 IIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYLTEKEEMLRVEELQNAEFDKKLAQ 265
Query: 272 ELEWVRQGAKGRQSKGKARMARFEELNTNDYQKRNETNE--LFIPPGPRLGDKVIEVNNL 329
E W+RQG K R+++ + R+ + L ++R + L I R G V E NL
Sbjct: 266 EEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQGKVNLQIDDSNRSGKIVFEAENL 325
Query: 330 TKSYGDRVLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDSGSIELGETVQLA 389
S G + ++D SF++ +G + +IG NG GKSTL ++L G QPDSG + G +++A
Sbjct: 326 HYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQPDSGKVHCGTKLEVA 385
Query: 390 SVEQFRDSMNDKNTIWQEISGGQDIMRINNMEIPSRAYVGRFNFRGGDQQKIIGTLSGGE 449
+Q+R+ ++ + T+ ++ G+ + + + +Y+ F F + + LSGGE
Sbjct: 386 YFDQYRELLDPEKTVIDNLADGKQEVMVGGRLRHALSYLQDFLFSPKRARTPVKALSGGE 445
Query: 450 RNRVHLAKLLQAGGNVLLLDEPTNDLDVETLRALEEAILEFPGCAMVISHDRWFLDRIAT 509
+NR+ LA++L N+L+LDEPTNDLD+ETL LEE + + G +++SHDR F+D T
Sbjct: 446 KNRLLLARILLKANNLLVLDEPTNDLDIETLELLEELLANYQGTLLLVSHDREFVDNTVT 505
Query: 510 HILDYRDEGQVNFYEGNY 527
+ +G++ + G Y
Sbjct: 506 SSWIFEGDGKIEEFVGGY 523
Score = 107 bits (268), Expect = 1e-27
Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 37/242 (15%)
Query: 323 VIEVNNLTKSYGDRVLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDSGSIEL 382
+I ++N ++GD L+D+ F++ + V ++G NGAGKSTL ++L+G D G +++
Sbjct: 3 LITIHNGLLAFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQV 62
Query: 383 GETVQLASVEQFRDSMNDKNTIWQEISGG-----------QDIMRINNMEIPSRAYVGRF 431
+ V ++ +EQ N T++ +SGG QD + + + PS + + +
Sbjct: 63 MQDVVVSRLEQ-DPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATD-PSESNINKL 120
Query: 432 -----------NFRGGDQQK-IIGT-----------LSGGERNRVHLAKLLQAGGNVLLL 468
+R D+ K ++G+ LSGG + + LA+ L +VLLL
Sbjct: 121 AHIQEQLEVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLL 180
Query: 469 DEPTNDLDVETLRALEEAILEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYT 528
DEPTN LDV T+ LE + +F G + ISHDR F+ +AT I+D D GQ++ + G+Y
Sbjct: 181 DEPTNHLDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDL-DRGQLSSFPGDYE 239
Query: 529 EY 530
Y
Sbjct: 240 NY 241
Score = 102 bits (255), Expect = 3e-26
Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 46/280 (16%)
Query: 19 KQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTEIEGEARPMPGLKIGYLPQ-E 77
K I+ S + G +I ++G NG GKSTLL+I+ G G+ L++ Y Q
Sbjct: 332 KTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQPDSGKVHCGTKLEVAYFDQYR 391
Query: 78 PKLDPNQTVREAIEEAVSEAKNALKRLDEVYAAYAEPDADFDALAKEQGELEAIIQAQDA 137
LDP +TV D LA G+ E ++ +
Sbjct: 392 ELLDPEKTV-------------------------------IDNLA--DGKQEVMVGGRLR 418
Query: 138 HNLDNILERAANALRLPDWDEKIEVLSGGERRRVAICRLLLEKPEMLLLDEPTNHLDAES 197
H L + + + R ++ LSGGE+ R+ + R+LL+ +L+LDEPTN LD E+
Sbjct: 419 HALSYLQDFLFSPKRA---RTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIET 475
Query: 198 VAWLEHFLQEYAGTVVAITHDRYFLDN--AAGWILELDRGEGIPWEGNYSSWLEQKDARL 255
+ LE L Y GT++ ++HDR F+DN + WI E D G+ + G Y +Q+ A++
Sbjct: 476 LELLEELLANYQGTLLLVSHDREFVDNTVTSSWIFEGD-GKIEEFVGGYHD-AQQQRAQV 533
Query: 256 KQESAAESARQKTIAKELEWVRQGAKGRQSKGKARMARFE 295
Q AAE+ I K+ + V + K SK K + ++
Sbjct: 534 LQSRAAEN-----IVKKEKVVEESPKSAPSKTKQKKLSYK 568