Pairwise Alignments

Query, 381 a.a., riboflavin biosynthesis protein RibD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 386 a.a., riboflavin biosynthesis protein RibD (RefSeq) from Shewanella loihica PV-4

 Score =  508 bits (1307), Expect = e-148
 Identities = 260/375 (69%), Positives = 295/375 (78%)

Query: 1   MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60
           M WS  D+QMM+RAI+LARKG YTT PNP+VGCVIV    +VGEG+H  AG PHAEVHAL
Sbjct: 5   MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64

Query: 61  RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120
           RMAG+ A+GATAYVTLEPCSHYGRTPPCA ALI   V RVVVAV DPNPQV GRGI+ML+
Sbjct: 65  RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124

Query: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180
           DAGI V+VGLH++EA ALN GFMKRM SGLPWV +KLA SLDGKTALSNGVSKWITGPEA
Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184

Query: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240
           RRDVQR+R R  A++TGIETVLADDPSLNVR+ ELGSL  QL+E+ + QPLRVVLDSRAR
Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244

Query: 241 MPITAALFAIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLGKSCN 300
           +   A LF  +SP+LLVS   Y        P  V+ LQLP+  G++ L ALL +LG   N
Sbjct: 245 LGAKAKLFETQSPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGSQLN 304

Query: 301 QVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLVDER 360
            V++EAGATLAGAF+  GLADELVLYQA KILGG GRNLL LPDY  M  +P LKL DER
Sbjct: 305 SVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLCDER 364

Query: 361 KVGADTRFTLRLESN 375
            +GAD R T +L  N
Sbjct: 365 AIGADRRLTFQLSHN 379