Pairwise Alignments

Query, 552 a.a., DNA repair protein RecN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 557 a.a., DNA repair protein RecN from Rhodanobacter denitrificans FW104-10B01

 Score =  378 bits (971), Expect = e-109
 Identities = 220/555 (39%), Positives = 321/555 (57%), Gaps = 6/555 (1%)

Query: 1   MLCQLSINNFAIVRFLELDFSPGMTSITGETGAGKSIAIDALGLCLGNRADASSVRPGAS 60
           ML  L + +FA+V   E+ F PG+T ++GETGAGKS+ +DAL L  G RAD+  VR G+ 
Sbjct: 1   MLTSLYVRHFAVVEAAEVAFGPGLTVVSGETGAGKSLLVDALMLLAGARADSGMVRAGSD 60

Query: 61  KTEVSARFSLHDVPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLTQLKLL 120
           + E++A F L  +P A+ WL+  +L+ D  C LRR I ++G SRA+ING P    QL  L
Sbjct: 61  RAELAAEFDLTGLPAARNWLQREELDEDGGCQLRRVIRAEGSSRAWINGRPANARQLGEL 120

Query: 121 GQLLVGIHGQHAHHAMLKSEHQLTLLDSYANHRLLIDTVTASYQRCKQIEAELKQLEASQ 180
             LLV IHGQH H A+L   HQL LLD+YA H  L+  V  S  + +++ A +++L    
Sbjct: 121 AALLVEIHGQHEHQALLSRPHQLALLDAYAGHDELLAQVRDSAAQWRELGARMRKLSGGD 180

Query: 181 HERIARKQLVQYQVEELDEFDLKVGEFEEIEQEHKRLANGTELVDSCQASLYLLTDGEES 240
            +R  R +L+++++ EL+++ L   E  E+E +H+RLAN   L +     + LL    E 
Sbjct: 181 -DRGQRIELLRHEIGELEKWALPPAELAELEADHRRLANAGRLAEGSAGVVELLDGDSEF 239

Query: 241 NIESLLNKVVSLAENLQSYDPALTNVSTMLNEALIQVQESAGELQHYLSKLELDPAYFAY 300
            +   L +  +    L + D  L  +  +L+ A IQ+ ESA  L  Y   ++LDP  F  
Sbjct: 240 ALRRALGRAHAELGKLAALDDRLNPLLELLDNAGIQLGESADGLARYAQDVDLDPQRFTE 299

Query: 301 LEERLSKAMQLARKHHVSPDKLAEHHLALKAELTTLDDDETKLEEIQLQVEASKSAYLAN 360
           ++  L++  +L+R+H +   +L +   AL+AEL  L+     LE +  Q    +  Y+  
Sbjct: 300 VDNHLARLHELSRRHRLPVAELHDRLAALQAELAELEGAGDALERLAEQRRRLQDDYVGA 359

Query: 361 AQKLSQSRARYAKELDKLVTQSIHELNMPKGKFTIEVNFNPEIMS---VNGSDNIEFMVT 417
           A +LS +RA     L   V+  + EL M  G   +E+   P   S     G +  E +V+
Sbjct: 360 AARLSAARAAAGDRLGDEVSTLMAELGMAGGLLRVEL--EPSAGSEPDPQGEERCELLVS 417

Query: 418 TNPGQPLQPISRVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGRML 477
            NPGQP +P+ +VASGGEL+RI L I+V T  K    ++IFDEVD GI G  A VVG+ L
Sbjct: 418 ANPGQPPRPLRKVASGGELARISLAIEVATLGKDTIGSMIFDEVDSGIGGAVAEVVGQKL 477

Query: 478 RSLGESTQVLCVTHLPQVAGNGHQHMFVNKFNKAGSTETTMTPLDKEQRIQELARLLGGD 537
           R+LG   QVLCVTHLPQVA  GH H+ V+K +   +T T +  LD   R  ELAR+LGG 
Sbjct: 478 RALGVQRQVLCVTHLPQVAAQGHAHLRVSKSSDGDATRTQIERLDAAGRRDELARMLGGV 537

Query: 538 TITSNTLANARELLQ 552
            IT  T A+A+++L+
Sbjct: 538 EITRETRAHAKQMLE 552