Pairwise Alignments

Query, 299 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., LyrR family transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  137 bits (345), Expect = 3e-37
 Identities = 88/295 (29%), Positives = 153/295 (51%), Gaps = 16/295 (5%)

Query: 8   ELQLIYLFVHLVNAGSFSQAAKDLDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67
           +L  + +F  +V  GS + AA+ L +  + VS+ L KLEE+L  +L  R+TR++ LTE+G
Sbjct: 5   QLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDG 64

Query: 68  LALFQRYQSVIA---QFDELSGIGSDKPEGTLRIAAPISIISIIFIHALNEFGRLYPDIR 124
              F     ++    Q + ++    +   G+LR+ AP+ +     +  + +F R YP+IR
Sbjct: 65  REFFHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIR 124

Query: 125 LHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYRLFATPEYLAHAPELTHPD 184
           L +   +  ++L++  IDVAI  G   DS + +  LG  D +L A+PEY+A   +  HPD
Sbjct: 125 LTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKLGSFDEQLVASPEYVAAHGKPLHPD 184

Query: 185 DLENHQ--------LIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGI 236
           +L++HQ        L K W L N       GE F       ++    +G I   L   G+
Sbjct: 185 NLQHHQWLAHASGHLPKTWTLHN-----GQGEEFRVRITPFISCNSTNGLIAMALQGLGV 239

Query: 237 LYGPELFVKQQIKEGRLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSK 291
              P+  V + +  G L++LLP++   +  +  L+  +   P +VRVF++F++ +
Sbjct: 240 AILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKER 294