Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 450 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pseudomonas stutzeri RCH2

 Score =  336 bits (862), Expect = 8e-97
 Identities = 191/434 (44%), Positives = 263/434 (60%), Gaps = 10/434 (2%)

Query: 15  LSAKQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETP 74
           +  KQ  ++++L + G GIA  +G+  F+ GALP E V+A++   +     A+  +V   
Sbjct: 23  IGKKQRLNIERLANDGRGIAFVEGRTWFVEGALPGEEVEARVLSARSQVVEARCERVLQA 82

Query: 75  STERVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSL-APALSGEGW 133
           S +R    CPH   CGGC+LQH  +  Q   K   L + +A+ A  +    A  L G  +
Sbjct: 83  SAQRQVEPCPHARLCGGCNLQHAPIADQLALKQHTLAEQLARVADLQPEAWAEPLVGPAF 142

Query: 134 HYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAA 193
            YRRRARLA  +D  +K L +GFRASSS  +VSI EC VL +PL  L+      L  L+ 
Sbjct: 143 GYRRRARLAVRWDVKSKHLDIGFRASSSQEIVSIRECPVLVQPLQTLLPGLLTALRDLSK 202

Query: 194 KSSLGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGEFHGVNGT 253
             ++GH+EL +       +IR T +L + D+A+L  FA  H+  +  Q  EGE    +  
Sbjct: 203 PQAIGHVELFSG-TAEAVLIRHTAALPESDLARLRSFATAHRAQLWWQ-GEGEPQPDDCA 260

Query: 254 LLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCG 313
             L  Y+L     D   + L + PG+FVQVNA +N AMVAQAL+WL     E +LDLFCG
Sbjct: 261 ASLG-YRL-----DAWDLELAWRPGDFVQVNAPVNDAMVAQALEWLDAGKDEAVLDLFCG 314

Query: 314 MGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK- 372
           +GNFSLPLAR GA V+GVEGV  MV++A+ENA  N L +  FY  DLS  L+  PW G  
Sbjct: 315 LGNFSLPLARSGARVVGVEGVEAMVARAQENAQRNALEHAHFYRADLSKPLADAPWAGSG 374

Query: 373 IDKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDM 432
              +LLDP R GA E ++ +  +K ++VVYVSCNPA+LARD+  L  +GY+L++ G++DM
Sbjct: 375 FAAVLLDPPRDGALEIVRQMSMLKAQRVVYVSCNPATLARDARELASQGYRLKRAGVLDM 434

Query: 433 FPQTHHIEAMALFE 446
           FPQT H+EAMALFE
Sbjct: 435 FPQTAHVEAMALFE 448