Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 465 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) from Rhodospirillum rubrum S1H

 Score =  120 bits (301), Expect = 9e-32
 Identities = 122/483 (25%), Positives = 191/483 (39%), Gaps = 67/483 (13%)

Query: 7   AKPNSSKQLSAKQSFS--VQQLDHLGAGIAQHQG---KVVFIPGALPNETVQAQLTEQKK 61
           A P  S++  +       V  L   G G+A+      ++ ++ GALP E V+ +   +K 
Sbjct: 3   AAPRKSRKRPSSSPLEAIVHALGDRGDGLARPASGGERLFYVAGALPGERVRLRPQGRKG 62

Query: 62  NYARAKLIKVETPSTERVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAE 121
           +   A+L  V   S ERV P CPH   CGGCDLQH+   A  + K   +V  +A      
Sbjct: 63  DGEIAELEAVIEASAERVDPPCPHAALCGGCDLQHLDPPALADWKRDKVVRALAHRGLGT 122

Query: 122 GSLAPALSGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLI 181
            ++   LS        R RL+       +    GF A  S  ++    CL+   PL+ L+
Sbjct: 123 VTVDQTLSLPA---GTRRRLSVGLRGRARHGVCGFFARESHRLIDTPHCLLPTPPLAALM 179

Query: 182 APFAKLLNQLAAKSSLGHLELIAADNG---HFAVIRITKSLNDKDMAKLAQFAEQHQIHI 238
               + L    A ++ G   +   + G      +    +    + +A LA+ A+  ++ +
Sbjct: 180 EHLRRALPGFLAPAAEGTALMTETETGIDLRLDLPTAPELTGREALAALAEDADLARLTL 239

Query: 239 CLQDNEGEFHGVNGTLLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDW 298
            +     E          PV      K  +    +   PG F+Q +    +A+    L  
Sbjct: 240 TIAGGSEE----------PVALRRAPKLTLGGTPVLPPPGPFLQPSVDGERALTDLVLAA 289

Query: 299 LAPQP-GERILDLFCGMGNFSLPLARMG---------ADVIGVEGVPEMVSQARENAVAN 348
               P G  I DLFCG+G F+LPLA  G         +  IG  G        +  A   
Sbjct: 290 FEDLPAGAVIADLFCGLGTFALPLAARGFKLRGWDIESSAIGALGATAPARAGKVQATTR 349

Query: 349 GLSNLTFYHGDLSADLSSEPWMGKIDKLLLDPARAGAYESLQWL---------------- 392
            L        +L+       W G    ++LDP RAGA   ++ L                
Sbjct: 350 DLFRRPLVAEELAG------WSG----VVLDPPRAGAKAQVEALAAAGPGPLGAPVRPSI 399

Query: 393 ----------KKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAM 442
                         P  +V VSC PAS ARD+  L++ GY++  +  +D F  +HH+E +
Sbjct: 400 LGIVGGAPAAAATGPSVIVLVSCAPASFARDARALVDGGYRIDWVRPVDQFTWSHHVEVV 459

Query: 443 ALF 445
           A F
Sbjct: 460 ARF 462