Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  300 bits (768), Expect = 6e-86
 Identities = 175/437 (40%), Positives = 258/437 (59%), Gaps = 22/437 (5%)

Query: 23  VQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTERVSPL 82
           ++ LDH   G+ + +GK VF+ GALP ETV+  L  +K NYA  ++  V  PS  RV P 
Sbjct: 6   IESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVPPR 65

Query: 83  CPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGS-LAPALSGEGWHYRRRARL 141
           CPH+ TCGGC +QH+  TAQ   K   L + +   A  +   +   + G  W YR RARL
Sbjct: 66  CPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARL 125

Query: 142 ATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSSLGHLE 201
            T+    +K + +GF    SS+V  +  C +L   +SDL+ P  +L  +L+ +  L  +E
Sbjct: 126 -TVRMVESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVE 184

Query: 202 LIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQD----NEGEFHGVNG---TL 254
           +   +     V+RI + L+  D   L  FA++H I   LQ     +   FH V+G   + 
Sbjct: 185 IAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHPVDGPDLSY 244

Query: 255 LLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGM 314
           LLP + L           + F+P  F QVN  IN+ ++ +A+  L PQPGERI DLFCG+
Sbjct: 245 LLPEFGL----------EMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGL 294

Query: 315 GNFSLPLARMGADVIGVEGVPEMVSQARENAVANGL-SNLTFYHGDL-SADLSSEPWMGK 372
           GNF+LP+AR GA V+GVEG+ E+  +A ENA ANGL +N++F   +L      S   +G 
Sbjct: 295 GNFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGH 354

Query: 373 IDKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLL-ERGYKLQKLGLID 431
            DK+L+DP R GA E ++ L +  P ++VYVSCNP++LARD+A+L+ ++GY+    G+++
Sbjct: 355 FDKMLIDPPREGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVN 414

Query: 432 MFPQTHHIEAMALFELA 448
           MFP T H+E++ALFE A
Sbjct: 415 MFPHTSHVESIALFEKA 431