Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 436 a.a., 23S rRNA 5-methyluridine methyltransferase from Marinobacter adhaerens HP15

 Score =  314 bits (804), Expect = 4e-90
 Identities = 173/428 (40%), Positives = 248/428 (57%), Gaps = 4/428 (0%)

Query: 23  VQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTERVSPL 82
           ++ L H G GIA+  GK  F+ GALP ETV A++   +  +   +  +V   +  R +P 
Sbjct: 5   IETLSHDGRGIARQDGKTQFVDGALPGETVMAKVVSSRSKFDELRTEEVLDAAPGRQTPP 64

Query: 83  CPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGS--LAPALSGEGWHYRRRAR 140
           C     CGGC LQHMS  AQ E K   L +  A F G E    +AP  S E   YRR+AR
Sbjct: 65  CEFADLCGGCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESLGYRRKAR 124

Query: 141 LATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSSLGHL 200
           L   + K  + + +GFR   +S +  I  C+VL   + + I P   +L+ L A S +  +
Sbjct: 125 LGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDLEAYSRIPQV 184

Query: 201 ELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGE-FHGVNGTLLLPVY 259
           E+   D+    V R    L+  D  KL  F + H++HI LQ    +  H +         
Sbjct: 185 EIACGDDVAVMVFRNMDELSVGDREKLIAFGQAHELHIYLQPKGPDTVHRIWPESAGRDE 244

Query: 260 QLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSL 319
           + L  + D   +++ F P +F QVNA IN+AMV +A++WL  QPGER+LDLFCG+GNF+L
Sbjct: 245 ERLSYRLDEFDLTMRFHPMDFTQVNAGINRAMVHRAVEWLDVQPGERVLDLFCGLGNFTL 304

Query: 320 PLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK-IDKLLL 378
           PLA  G  V+GVEG   MV + RENA  NGL N+ F+  DL  D + + W  +  DK+L+
Sbjct: 305 PLATRGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLHGDFTGQSWAKEGFDKILI 364

Query: 379 DPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHH 438
           DP R+GA E  ++L     +++VYVSCNPA+LARD+ V++  GY+L + G++DMFP T H
Sbjct: 365 DPPRSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTH 424

Query: 439 IEAMALFE 446
           +E++ALFE
Sbjct: 425 VESIALFE 432