Pairwise Alignments

Query, 522 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  244 bits (622), Expect = 8e-69
 Identities = 172/527 (32%), Positives = 272/527 (51%), Gaps = 24/527 (4%)

Query: 3   THSKKGEKHLSENAILLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHEDMPAA 62
           T S + E  + ++  L+STTDLKG I Y N TF +I+ +   EL G  HNIVRH  MP A
Sbjct: 21  TPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKA 80

Query: 63  AFKMLWDRIKTGKPWMGIVKNKTKNGSYYWVNAYVAPVYEDGKIHEYQSVRRQATPEQIR 122
           AF  +W  +K G  W GIVKN+TK+G +YWV+AYV P+Y+ G++  YQSVR +A  + + 
Sbjct: 81  AFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVE 140

Query: 123 AAEEVYLAINQGKQAKTLKKDRLGFRGKILTAMFVAIAATASLA-------CYSPLLAAL 175
            A + Y A+   ++A   KK +      +  A+ +    + +LA        +  L + L
Sbjct: 141 IATKAYQALLAAEKAG--KKIQFKLHTSLRYALLLGALMSPALAHGFQAPEQWQWLASLL 198

Query: 176 VGGLIAWFLWYKLMQPLQALVSVATNIIDDPVAMGIYTGRQDEIGKIDLALRFLISEIGG 235
             G++      +L++  Q L         D ++  IY+G  D     D  L+   + I  
Sbjct: 199 PAGVLGLLFRQELVRTPQQLKQWQNEY--DSISRLIYSG-ADAFSVADYHLKMASARIRT 255

Query: 236 VVGRMADSASEIQEQSVNLKQTITNTWEHADSQSAQ---TTQAATAMEQMSASFAEVTDN 292
           ++GRM DSA  + E +  L  T     +   +Q++     TQA  A+E  +   +  T +
Sbjct: 256 ILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHS 315

Query: 293 IHRTASEMVSSHEAAQRGHSRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVI 352
            H+   + V  H  A+  HS +    + + +L+ Q    +     +   +Q + Q++  I
Sbjct: 316 AHQLI-DQVQDH-CAETKHS-INVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEI 372

Query: 353 RAIADQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFRDST 412
             IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LS+RT ++T QI+  +     + 
Sbjct: 373 GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTI 432

Query: 413 QRATSTMTAGQEQVKRSVSLAQDASVAFGELLS---SISRINSLSDDNAAAMTQQTTVAA 469
           +     +TA ++Q ++    AQDA+    +L      +S +  +  + A+A   Q  +  
Sbjct: 433 EAWRGDITASRDQTEQ---CAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTC 489

Query: 470 EISRAIHVISDLAQQSLQQTQDAAARGEQVSRLSTKTHHLSQQFWQQ 516
           E+++ IH I+ +A Q+   T         +S    +   LS+QF Q+
Sbjct: 490 EVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQFAQK 536