Pairwise Alignments

Query, 615 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 594 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  340 bits (871), Expect = 1e-97
 Identities = 210/607 (34%), Positives = 324/607 (53%), Gaps = 29/607 (4%)

Query: 9   LIAFALTTLLALPTSAVPSLNDSHNVASASVTAQSES-EKANALFETIFMENIMASPIAQ 67
           L+  +LT     PT+         +VA+   T+ S+S ++   + +  +   + +SP   
Sbjct: 9   LLLLSLTACQMAPTA---------DVATTPKTSVSQSHQQLQRIMDDAWQLRLESSPEMA 59

Query: 68  TYMGIKQDYDKWDEIGDEADALELARTQKQLAEINQLDASKLDPQTRLSLALLTQNLNND 127
              G +    K D++  EA A      Q  LA +N LD + L+   R+   +L   L N 
Sbjct: 60  YAQGDETAAGKLDDLSPEALANHNQAEQALLARLNALDLASLNKADRIDAQILIYQLQNS 119

Query: 128 IKDYQWRYHTYPVNQMRGGHSMIASFLINQHQITDVSDAKAYISRLNGVPKRLTQLQKAL 187
           +  Y++  H  P+    G H+ IAS  I +      +D + Y+S+L  +P+  +Q    L
Sbjct: 120 VDQYRFHDHYLPITAESGFHAYIAS--IAKGNFNSEADYRNYLSKLEALPRYFSQQTYWL 177

Query: 188 EVRAEKGIIAPKFVF-GYVISDSQNILKGAPFDKNEDSALLADFRKKVKALSIPETEKAP 246
           +    +GI   + V  G+  S S  I+        E S     F    K  +  + +KA 
Sbjct: 178 KQGLAQGITPARVVLNGFEESISAFIVPV------EQSGYFKPFTHFPKHFT--QAQKAE 229

Query: 247 LIAEAEKALTSQVAPAYKALISYIKTLEAKADTRDGV--WKLPDGDAFYNNALARTTTTD 304
           L  + +  +   V P+Y+A   ++ T E     R+ +  + LPDG AFY N +   TT  
Sbjct: 230 LTEQGKALIEQNVLPSYQAFYDFM-TQEYIPGARESIAAYDLPDGKAFYENRVRYYTTLP 288

Query: 305 MTADEIHQLGLAEVERIHNEMRAIMKKVHFNGTLQAFFAFMRNNPQFYYPNTPEGKAAYL 364
           MTADE+HQLGL EV+RI  EM+AI+ K+ + G+   F  F+R +PQFY   TPE     L
Sbjct: 289 MTADEVHQLGLKEVKRIRAEMQAIIDKLGYQGSFADFLHFLRTDPQFY-AKTPE---QLL 344

Query: 365 ADATQLIDNMHSRLDEVFKVKPKAAMIVKQVESFREKSAGKAFYEQPAPDGSRPGSYYAN 424
            +A  +     + L + F   P+    +++V +          Y   + D  +PG Y+ N
Sbjct: 345 KEAAFIAKKADAMLPKFFGKLPRTPYGIQEVPAEIAPKYTTGRYSGASGD-DQPGYYWVN 403

Query: 425 LYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLYSESF 484
            Y +   P Y++EAL  HE +PGHH+QI++++EL  +P FR++   +A+ EGWGLYSE  
Sbjct: 404 TYALDKRPLYELEALTLHEAVPGHHLQISLNKELTSLPNFRRYSYISAFGEGWGLYSEYL 463

Query: 485 PKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKSDAVK 544
             E G Y DPYS+FGRL  E+WRA RLVVDTG+HAK WTR+Q I Y   NT  +  +   
Sbjct: 464 GLEGGFYQDPYSNFGRLTYEMWRAARLVVDTGMHAKGWTRQQAIDYMAGNTALSLHNVTT 523

Query: 545 MVERHIVMPSQATAYKVGMIKLLELRHKAEKQLGDKFDIRDFHTLILANGALPLDVLEEH 604
            ++R+I  P QA +YK+G + +  LR KAE+ LG+KFDIR FH  +LANG++P+ +LE+ 
Sbjct: 524 EIDRYISWPGQALSYKIGELTIKRLRAKAEQALGEKFDIRAFHDAVLANGSVPMALLEQQ 583

Query: 605 VNQWIAS 611
           ++ +IA+
Sbjct: 584 IDDFIAA 590