Pairwise Alignments

Query, 615 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 611 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  372 bits (955), Expect = e-107
 Identities = 226/616 (36%), Positives = 341/616 (55%), Gaps = 37/616 (6%)

Query: 16  TLLALPTSAVPSL---NDSHNVASASVTA----------QSESEKANALFETIFMENIMA 62
           TLLAL  SA+ ++   +D    AS + T+          QS  ++  AL +  F + +  
Sbjct: 4   TLLALTISALVAMVGCSDKETSASQAKTSAPEQTVAPQVQSAEQEYLALVDRYFNDMLKL 63

Query: 63  SPIAQTYMGIKQDYDKWDEIGDEADALELARTQ---KQLAEINQLDASKLDPQTRLSLAL 119
            P+  T++G+    D++   GD  +    +R +   + L  +  +D S L    +LS  +
Sbjct: 64  EPMYATFVGVNDYNDQFG--GDLTEEYLKSRHELNSRYLKAVKAIDRSALPEPLQLSYDM 121

Query: 120 LTQNLNNDIKDYQWRYHTYPVNQMRGGHSMIASFLI-----NQHQITDVSDAKAYISRLN 174
            T + N  +    +  +  P+NQ    +S + + +      +      V D + ++SRL+
Sbjct: 122 FTYDRNMALVSETFPSYFMPMNQF---YSTVITMVQLGSGESAQPFNTVKDYENWLSRLS 178

Query: 175 GVPKRLTQLQKALEVRAEKGIIAPKFVFGYVISDSQNILKGAPFDKNEDSALLADFRKKV 234
           G        Q  ++      ++ P+ +   +I   +  L   P     DS   A      
Sbjct: 179 GFINWTKLAQARMDEGIASKVVLPRVLVERIIPQLEAQLVEQP----SDSLFYAPITNLP 234

Query: 235 KALSIPETEKAPLIAEAEKALTSQVAPAYKALISYIK-TLEAKADTRDGVWKLPDGDAFY 293
           ++ S  E EK  L  + +  +  ++ PA  +L  Y + T    A   DG W LP+G  +Y
Sbjct: 235 ESFS--EEEKQKLTQQYDTLIGKELIPALASLKQYFQETYLPVARASDGWWGLPNGKLWY 292

Query: 294 NNALARTTTTDMTADEIHQLGLAEVERIHNEMRAIMKKVHFNGTLQAFFAFMRNNPQFYY 353
            +     TTT M  DEIHQ+GL EV RI +EM  + ++V F G L+AFFA + + PQ+++
Sbjct: 293 QHLANAHTTTTMPVDEIHQIGLDEVARILSEMDKVREQVGFKGDLKAFFASLSSEPQYFF 352

Query: 354 PNTPEGKAAYLADATQLIDNMHSRLDEVFKVKPKAAMIVKQVESFREKSAGKAFYEQPAP 413
                    Y+     L + +++ L   F V PKA  +VK VESFRE+SA  A YE PA 
Sbjct: 353 SERQGLIDGYMV----LKEKINAVLPNYFNVMPKADYVVKPVESFREQSAAGASYEAPAV 408

Query: 414 DGSRPGSYYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAY 473
           DGSRPG +Y N Y++KA PK+ M  L+ HE  PGHH QIAI QEL  +P+F++F GYTA+
Sbjct: 409 DGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAF 468

Query: 474 IEGWGLYSESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVD 533
            EGW LY+E    EMGL+ DPY  FG+L+ E+ RA RLVVDTG+HAK W+REQ I Y  D
Sbjct: 469 EEGWALYAEYLGIEMGLFEDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKD 528

Query: 534 NTPNAKSDAVKMVERHIVMPSQATAYKVGMIKLLELRHKAEKQLGDKFDIRDFHTLILAN 593
           N+P A++D +  VER++ +P QA +YKVG +K+L LR +AEK LGDKFD++ FH  IL +
Sbjct: 529 NSPMAETDIIAEVERYMAIPGQALSYKVGQLKILALRAEAEKALGDKFDLKGFHDQILTS 588

Query: 594 GALPLDVLEEHVNQWI 609
           G+LP+ V+E+ +++WI
Sbjct: 589 GSLPMAVMEQKIHRWI 604