Pairwise Alignments

Query, 615 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 613 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  879 bits (2272), Expect = 0.0
 Identities = 436/613 (71%), Positives = 509/613 (83%), Gaps = 9/613 (1%)

Query: 1   MPIKTNISLIAFALTTLL-----ALPTSAVPSLNDSHNVASASVTAQSESEKANALFETI 55
           MPIKT  +++A +L TLL     A P S +P L+ S  V   S     ESEKAN LFETI
Sbjct: 1   MPIKTKTTMLAISLATLLSGAVHAAPVS-LPLLSASEPVQKISA---QESEKANQLFETI 56

Query: 56  FMENIMASPIAQTYMGIKQDYDKWDEIGDEADALELARTQKQLAEINQLDASKLDPQTRL 115
           FMEN+MASPI+QT++GIK DY KWDE G+ AD   LAR ++ LA++ Q+D SKLD QT L
Sbjct: 57  FMENVMASPISQTHLGIKTDYGKWDERGEAADKKSLARDKQHLAQLKQIDKSKLDAQTLL 116

Query: 116 SLALLTQNLNNDIKDYQWRYHTYPVNQMRGGHSMIASFLINQHQITDVSDAKAYISRLNG 175
           S  LLTQ L   I DY+WR +TYPVNQM GGHSM+ASFLINQHQI  VSDA+AYISRL G
Sbjct: 117 SYDLLTQKLEQSISDYKWRLYTYPVNQMYGGHSMVASFLINQHQIDSVSDAEAYISRLKG 176

Query: 176 VPKRLTQLQKALEVRAEKGIIAPKFVFGYVISDSQNILKGAPFDKNEDSALLADFRKKVK 235
           VP  + QL++ALE RA+ GIIAPKFVF YV+SDS+NI+ GAPFD+ +DSA+ ADF++KV 
Sbjct: 177 VPHYMQQLEEALEERAKAGIIAPKFVFAYVLSDSRNIISGAPFDQTDDSAIWADFQRKVA 236

Query: 236 ALSIPETEKAPLIAEAEKALTSQVAPAYKALISYIKTLEAKADTRDGVWKLPDGDAFYNN 295
            L+I + ++  L+ EA++ALT+QV PAY  LI+Y++TLE +ADT+DGVWK  DG+AFYNN
Sbjct: 237 KLAIDDAQRNKLLDEAKQALTAQVKPAYDKLIAYVETLEKRADTKDGVWKFRDGEAFYNN 296

Query: 296 ALARTTTTDMTADEIHQLGLAEVERIHNEMRAIMKKVHFNGTLQAFFAFMRNNPQFYYPN 355
           ALARTTTT MTADEIHQLGLAEV+RIH EMRAIMKKV F G L+AFF FMR + QFYYP+
Sbjct: 297 ALARTTTTHMTADEIHQLGLAEVDRIHQEMRAIMKKVGFEGDLKAFFKFMREDKQFYYPD 356

Query: 356 TPEGKAAYLADATQLIDNMHSRLDEVFKVKPKAAMIVKQVESFREKSAGKAFYEQPAPDG 415
           T EG+ AYL DA  LIDN+ SRLDEVF VKPKA MIVK+VE+FREKSAGKAFY QP PDG
Sbjct: 357 TEEGRTAYLDDAKALIDNISSRLDEVFFVKPKAPMIVKRVEAFREKSAGKAFYNQPTPDG 416

Query: 416 SRPGSYYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIE 475
           SRPG+YYANLYDM+AMPKYQMEALAYHEG PGHHMQIAI+QEL+ IPKFRKFGGYTAYIE
Sbjct: 417 SRPGTYYANLYDMEAMPKYQMEALAYHEGTPGHHMQIAIAQELQGIPKFRKFGGYTAYIE 476

Query: 476 GWGLYSESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNT 535
           GWGLYSE FPKEMGLY DPYSDFGRLAMELWR+CRLVVDTGIHAK+WTREQGI YYV+NT
Sbjct: 477 GWGLYSEFFPKEMGLYKDPYSDFGRLAMELWRSCRLVVDTGIHAKRWTREQGIQYYVNNT 536

Query: 536 PNAKSDAVKMVERHIVMPSQATAYKVGMIKLLELRHKAEKQLGDKFDIRDFHTLILANGA 595
           PNA+SDA+KMVERHIVMPSQATAYK+GM+K++++R KA+  +GDKFDIR+FHTL+L NG 
Sbjct: 537 PNAESDAIKMVERHIVMPSQATAYKIGMLKIVDIREKAKAIMGDKFDIREFHTLVLKNGP 596

Query: 596 LPLDVLEEHVNQW 608
           LPLDVLE  V  W
Sbjct: 597 LPLDVLEAKVMNW 609