Pairwise Alignments

Query, 370 a.a., twitching motility protein PilU (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 345 a.a., type IV pili twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

 Score =  265 bits (677), Expect = 1e-75
 Identities = 140/330 (42%), Positives = 206/330 (62%), Gaps = 1/330 (0%)

Query: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESIFTPAQSLDFVESVMTEAQK 60
           MD+   L+  V+  ASDL ++AG PP  +IDGE+R L    FT +     +  +M +AQ+
Sbjct: 1   MDIAELLEFSVKHNASDLHLSAGVPPMVRIDGEVRKLGVPAFTHSDVHRLIFEIMNDAQR 60

Query: 61  KEFHTTRECNFAFAVKELGRFRVSAFWQRESPGCVMRRIETKIPEVDDLKLPPILKDLVM 120
            E+    E +F+F +  +GRFRV+AF Q      V R I T IP ++ L  P I   +  
Sbjct: 61  SEYEEKLEVDFSFELPNVGRFRVNAFHQARGCSAVFRTIPTVIPTLEQLDAPEIFSKIAN 120

Query: 121 SKRGLIIMVGGTGTGKSTSLAALVGYRNSHARGHILTIEDPVEFVHDHRKSIITQREVGI 180
            ++GL+++ G TG+GKST+LAA+V Y N+H   HILTIEDP+EFVH + K +I QREV  
Sbjct: 121 YEKGLVLVTGPTGSGKSTTLAAMVNYVNAHHNKHILTIEDPIEFVHSNNKCLINQREVHR 180

Query: 181 DTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI 240
           DT SF  AL+S+LR+ PDVIL+GE+R QET+  AL+ AETGHL   TLH ++A + +DRI
Sbjct: 181 DTHSFKNALRSALREDPDVILVGELRDQETISLALTAAETGHLVFGTLHTSSAAKTIDRI 240

Query: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELH 300
           + + P S    +   LS +LR ++AQ+L+ +V G GR A  E+++ TP + +LI ++++ 
Sbjct: 241 IDVFPGSDKDMVRSMLSESLRAVIAQKLLKRVGG-GRVACHEIMLATPAIRNLIREDKVA 299

Query: 301 LLKETMAKSNEQGMQTFDQALLQLYVDGEI 330
            +   +      GMQT +Q   QL   G +
Sbjct: 300 QMYSIIQTGAAHGMQTMEQNAKQLIARGVV 329