Pairwise Alignments

Query, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 345 a.a., transcriptional regulator, XRE family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 80/300 (26%), Positives = 119/300 (39%), Gaps = 42/300 (14%)

Query: 26  LGSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGYVKNYARMLGV 85
           LG  L+ ARE  GL I   A+++ +   ++  +E  +   +  S Y RG++K+YA +LGV
Sbjct: 6   LGIALREAREAKGLDIDDVAIRIKVSARVLRAIEDGEQDQLPHSVYARGFIKSYATVLGV 65

Query: 86  DNALIEACLARQVPFVTQPPMQSFSRKTTYQAR---DTKLKWLSFFIVIVLLGLFVVW-W 141
           DN L+   +    PF     +   +      AR      L  L+  ++ +L  L  VW +
Sbjct: 66  DNDLVMRVVDETYPFEVPEDLLPETVVAQPHARGRTGLSLVALALVLLTLLAALGGVWYY 125

Query: 142 MQRATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMATDGPVKDT 201
            Q+A+    +      A+   A  Q  P    +   DA+      A N + AT       
Sbjct: 126 RQQASREADLPKVAQPAQPPQADPQPAPAQDAVPAPDAAP-----ASNATNAT------- 173

Query: 202 DVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTVTASGAVQTPSTTATVTVPVQN 261
            VS++ P+ N     E    A S+ + +R S A       AS A Q P+  A    P Q 
Sbjct: 174 -VSAVAPSVN-----ETSPAAGSATQPARTSPA-----AAASSAAQVPAPAA--QAPAQG 220

Query: 262 TASAQTQVTANASATNVTSPTTNAQTMPAVA--GQSTLNIQLTG-----------DCWIN 308
              A    T  A A  VT P        A A  G  T    L G           DCW++
Sbjct: 221 ATPAAAPATPAAPAAAVTGPQGGVYDSEAAATSGADTDGSMLAGGTHRIVVIALADCWVH 280