Pairwise Alignments

Query, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 339 a.a., cytoskeleton protein RodZ from Pantoea sp. MT58

 Score =  125 bits (315), Expect = 1e-33
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 40/353 (11%)

Query: 27  GSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGYVKNYARMLGVD 86
           G  L+ AREQMGL+    A +L L+   V ++E D      +ST++RGY+++YAR++ + 
Sbjct: 16  GERLRLAREQMGLTQQNVAERLCLKLSTVRDIEEDKSPADLASTFLRGYIRSYARLVHIP 75

Query: 87  NALIEACLARQVPFVTQ--PPMQSFSRKTTYQARDTKLKWLSFFIVIVLLGLFVVWWMQR 144
              +   +A+Q P  +    PMQSFS     + RD  L   ++ +V V++GL   WW Q 
Sbjct: 76  EEELLPMMAKQTPIRSSKIEPMQSFSLGKRRKKRDGWLMIFTWLVVFVVVGLTGAWWWQ- 134

Query: 145 ATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMATDGPVKDTDVS 204
                               N     D L+  TD S+         S   +G       S
Sbjct: 135 --------------------NHKASQDDLVPMTDQSS---------SSGDNGQSIPLGES 165

Query: 205 SIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTVTASGAVQTPSTTATVTV-----PV 259
           S D      T      T ++S  +S  + A P  T + S     P  T+   V     PV
Sbjct: 166 SGDSAAPAATDESNTTTTSNSGAASAPASAAPAATASNSATTTQPDNTSNAVVSPSQAPV 225

Query: 260 QNTASAQTQVTANASATNVTSPTTNAQTMPAVAGQSTLNIQLTGDCWINIVDANGKAIVD 319
            N+A+A    T   SA         A   PA A  + + +    DCW+ + DA GK +  
Sbjct: 226 DNSAAAPAATTPTTSAAPPMPVGAAAVNEPA-ADPNAVVMNFNADCWLEVSDATGKKLFS 284

Query: 320 GVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAEFPK-GRVARLTI 371
           G++ +G  +  +G  P+++ +GAP  V       + + L+ F +  +VARLT+
Sbjct: 285 GIQRSGGKLSLAGTPPYRLKIGAPRAV-QVQYQNQPVDLSRFIRNNQVARLTL 336