Pairwise Alignments

Query, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 363 a.a., RodZ family helix-turn-helix domain-containing protein from Ralstonia sp. UNC404CL21Col

 Score =  100 bits (250), Expect = 5e-26
 Identities = 91/356 (25%), Positives = 145/356 (40%), Gaps = 46/356 (12%)

Query: 30  LKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGYVKNYARMLGVDNAL 89
           L++ RE+  L++   A +L + PG +  +E+ D S +   T+ +G ++ YAR L VD   
Sbjct: 41  LRAGRERQRLTVDDLAGRLKVAPGKLSAVESADVSALPDMTFTKGLIRAYARALQVDVDD 100

Query: 90  IEACLARQVPFVTQPPM-------QSFSRKTTY-QARDTKLKWLSFFIVIVLLGLFVVWW 141
             A L  + P VT   +       +SFS K ++ + R    +WL   +V V++    +  
Sbjct: 101 QLARLNARAP-VTNIGLRPEGGLGESFSDKPSFAKRRGGSGRWLIGVLVAVVVAGGALAG 159

Query: 142 MQR-----ATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMATDG 196
           M R     A+       ++ T +E  AA QT P     T   A A         + A   
Sbjct: 160 MDRLKQWFASQTAATQNTESTTKEAPAAEQTAPAQAAPTAEQAPAE--------TPAASM 211

Query: 197 PVKDTDVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTVTASGAVQTPSTTATVT 256
           P   T V+   P + V+TA        ++   S N  A P   V  +G            
Sbjct: 212 PTPLTPVAPAAPASGVVTA---PLAPPATLPRSGNGAAVPAAAVAGAGV----------- 257

Query: 257 VPVQNTASAQTQVTANASATNVTSPTTNAQTMPAVAGQSTLNIQLTGDCWINIVDANGKA 316
                          N  A     P   A+   +  G  T++++ +G  W  I D  GK 
Sbjct: 258 ----------KAAVVNVDAPVAVRPAETAKPAESAGGSGTVSVRFSGSSWYEIKDKTGKT 307

Query: 317 IVDGVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAEFPKGRVARLTIP 372
           +  G+   G     +G  PFKV+ G    V S  V G ++ L ++ + RVAR T+P
Sbjct: 308 LASGLSKEGDARDLTGTPPFKVVFGNAEAVESLAVGGASVDLQKYARNRVARATLP 363