Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 384 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI) from Rhodospirillum rubrum S1H

 Score =  384 bits (986), Expect = e-111
 Identities = 201/362 (55%), Positives = 256/362 (70%), Gaps = 11/362 (3%)

Query: 7   IKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTM 66
           I RR S +I VG+V +G  AP++VQ+MTNT TTDV ATVAQIR  ++ GADIVRVS P  
Sbjct: 9   ISRRVSRKIRVGSVFVGGDAPVSVQTMTNTLTTDVAATVAQIRRAQEAGADIVRVSCPDE 68

Query: 67  DAAEAFKLIKQSVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRSVVECAR 126
           ++  A K I   V VP+VADIHF Y+ A++ AE G  CLRINPGNIG+ ER+R VV  A+
Sbjct: 69  ESTAALKAIISQVEVPIVADIHFHYKRAIEAAEAGAACLRINPGNIGSAERVREVVRAAK 128

Query: 127 DKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFKVSVKASDVF 186
           D    +RIGVN GSLEK+L++KY EP PEA++ESA+ H  IL+  +F +FK+SVKASD F
Sbjct: 129 DHGCSMRIGVNAGSLEKELLEKYGEPCPEAMVESALSHARILEDNDFTEFKISVKASDAF 188

Query: 187 LAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISLAADPVE 246
           LAV +Y+ LA+    PLHLGITEAGG R G VKSA+G+G +L  GIGDT+R+SL+A P E
Sbjct: 189 LAVAAYKALAEACDYPLHLGITEAGGLRGGTVKSAIGIGSMLWAGIGDTIRVSLSAQPEE 248

Query: 247 EIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDVSIIGCV 306
           E+KVGF+ILKSL +R RG+  ++CPSC+RQ FDVI TV  LE RL  + T + +SIIGCV
Sbjct: 249 EVKVGFEILKSLNLRHRGVRVVSCPSCARQGFDVIKTVEVLESRLSHIQTPITLSIIGCV 308

Query: 307 VNGPGEALVSHIGLTGGHRKSGYYDEGERQK--------ERFDNDNLVDSLEAKIRAKAS 358
           VNGPGEA  + IGLTGG        EG   K           +N+ +VD L A +  KA+
Sbjct: 309 VNGPGEARETDIGLTGG---GNLAKEGALNKVYVSGIPDHTINNEAMVDHLVALVEKKAA 365

Query: 359 QM 360
           ++
Sbjct: 366 EI 367