Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 412 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase from Dechlorosoma suillum PS

 Score =  193 bits (490), Expect = 8e-54
 Identities = 142/398 (35%), Positives = 215/398 (54%), Gaps = 61/398 (15%)

Query: 7   IKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTM 66
           I RRP+  + VG V IG  AP+ VQSMTNT T D  AT  Q   L + G+++VR++V T 
Sbjct: 7   IPRRPTLGVKVGGVTIGGDAPVVVQSMTNTDTEDYLATALQTAELARAGSELVRITVNTP 66

Query: 67  DAAEAFKLIKQ-----SVSVPLVADIHFD-YRI-------ALKVAEYGVDCLRINPGNIG 113
           +AA A   I++      +SVPL+ D H++ +R+       A  +A+Y     RINPGN+G
Sbjct: 67  EAAAAVPKIREHLDRLGLSVPLIGDFHYNGHRLLTDHPECAQALAKY-----RINPGNVG 121

Query: 114 N----EERIRSVVECARDKNIPIRIGVNGGSLEKDLM-----DKYKEPTPE--------- 155
           +    +E+   ++E A   + P+RIGVN GSL++DL+     +  K P P+         
Sbjct: 122 HGKKRDEQFAQMIELACKYDKPVRIGVNWGSLDQDLLARIMDENAKRPEPKDAVQIMREA 181

Query: 156 ---ALLESAMRHVDILDRLNFDQFKVSVKASDVFLAVESYRLLAKQIRQPLHLGITEAGG 212
              + LESA + V+I   L  D   +S K S V   +  YR L+ + R  LHLG+TEAG 
Sbjct: 182 MVTSALESAEKAVEI--GLPADHIVLSCKVSGVQDLIAIYRELSARSRFALHLGLTEAGM 239

Query: 213 ARAGAVKSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFI 268
              G V S   +G+LL EGIGDT+R+SL  +P      E+ V  ++L+++ +R+      
Sbjct: 240 GSKGIVASTAAMGVLLQEGIGDTIRVSLTPEPGGKRTGEVIVAQEMLQTMGLRAFTPMVA 299

Query: 269 ACPSCSRQEF----DVISTVNELER------RLE-DVTTAMDVSIIGCVVNGPGEALVSH 317
           ACP C R       ++ ST+ E  R      R E D    M ++++GCVVNGPGE+  ++
Sbjct: 300 ACPGCGRTTSTFFQELASTIQEYVRAQMPQWRTEYDGVENMTLAVMGCVVNGPGESKHAN 359

Query: 318 IGL----TGGHRKSGYYDEGERQKERFDNDNLVDSLEA 351
           IG+    TG    +  +++GE+       DN+ +  +A
Sbjct: 360 IGISLPGTGEVPAAPVFEDGEK-TVTLRGDNIAEEFKA 396