Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 363 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  326 bits (836), Expect = 5e-94
 Identities = 167/328 (50%), Positives = 228/328 (69%)

Query: 7   IKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTM 66
           I+RR +  + +G+V IG   P+ VQSM NT T DV+ATV QIRAL  VG ++VR++V   
Sbjct: 3   IERRRTREVRIGSVRIGGDNPVVVQSMANTDTRDVDATVGQIRALAAVGCEVVRLAVLNE 62

Query: 67  DAAEAFKLIKQSVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRSVVECAR 126
            AA A   I+ +  VPLVADIHFD+R+A+   E GVD LRINPGNIG E  +  VV+ AR
Sbjct: 63  AAAAAIGPIRAASPVPLVADIHFDHRLAVAALEAGVDALRINPGNIGGEANVARVVDAAR 122

Query: 127 DKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFKVSVKASDVF 186
            +   IR+GVN GS+EK L++++  PTPEA++ESA+ HV +L+   F   K+S+K+S V 
Sbjct: 123 ARGACIRVGVNSGSVEKHLLERFGGPTPEAMVESALGHVRMLEDRGFGDIKISLKSSSVL 182

Query: 187 LAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISLAADPVE 246
             +++YR+LA++   PLH+G+TEAG    G+VKS+VGLG+LL  GIGDTLR+SL +DPVE
Sbjct: 183 HTIDAYRVLAERCDYPLHIGVTEAGTMLRGSVKSSVGLGVLLWLGIGDTLRVSLTSDPVE 242

Query: 247 EIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDVSIIGCV 306
           EI V ++IL+SL +R RG   I+CP+C R E  +IS   E+ERRL   T    V+++GC 
Sbjct: 243 EIPVAWEILRSLGLRHRGPEIISCPTCGRTEIGLISLAQEVERRLAGETENFKVAVMGCA 302

Query: 307 VNGPGEALVSHIGLTGGHRKSGYYDEGE 334
           VNGPGEA  + IG+ GG  K   + +GE
Sbjct: 303 VNGPGEAREADIGIAGGRDKGIIFRKGE 330