Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

 Score =  190 bits (482), Expect = 7e-53
 Identities = 132/383 (34%), Positives = 204/383 (53%), Gaps = 54/383 (14%)

Query: 6   PIKRRPSTRIYVGN----VPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRV 61
           P+ RR S R+ + +    + +G GAP+ VQSMTNT T D   T  QI+ L + G+++VR+
Sbjct: 10  PLVRRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEVVRL 69

Query: 62  SVPTMDAAEAFKLIKQS-----VSVPLVADIHFDYRIALKVAEY-----GVDCLRINPGN 111
           +V T +AA A   I++      V VPLV D H++    L   EY      +   RINPGN
Sbjct: 70  TVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLL--TEYPECAQALSKYRINPGN 127

Query: 112 IGN----EERIRSVVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTP------------- 154
           +G     + +   ++E A   + P+RIGVN GSL++ L+ +  +                
Sbjct: 128 VGKGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVMY 187

Query: 155 EALLESAMRHVDILDRLNF--DQFKVSVKASDVFLAVESYRLLAKQIRQPLHLGITEAGG 212
           EAL+ SA+ +    + L    D+  +S K S V   +  YR LA++   PLHLG+TEAG 
Sbjct: 188 EALVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAGM 247

Query: 213 ARAGAVKSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFI 268
              G V S   L +LL EGIGDT+RISL  +P     +E+ VG +IL+++ +R      I
Sbjct: 248 GSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMVI 307

Query: 269 ACPSCSRQEFDVISTV-NELERRLEDV----------TTAMDVSIIGCVVNGPGEALVSH 317
           ACP C R    V   + ++++  L +             AM+V+++GC+VNGPGE+  ++
Sbjct: 308 ACPGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGESKHAN 367

Query: 318 IGL----TGGHRKSGYYDEGERQ 336
           IG+    TG    +  + +GE++
Sbjct: 368 IGISLPGTGESPAAPVFIDGEKK 390