Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 428 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Ralstonia sp. UNC404CL21Col

 Score =  179 bits (454), Expect = 1e-49
 Identities = 130/365 (35%), Positives = 192/365 (52%), Gaps = 52/365 (14%)

Query: 6   PIKRRPS--TRIYVGN--VPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRV 61
           P+ RR S   +I  G+  V +G  AP+ VQSMTNT T+D   T  Q++ L + G+++VR+
Sbjct: 16  PLPRRNSRAAQIRWGDRVVHVGGDAPVCVQSMTNTDTSDAIGTAIQVKELARAGSELVRI 75

Query: 62  SVPTMDAAEAFKLIKQS-----VSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIG 113
           +V T  AA A   I++      V VPLV D H++    L+        L   RINPGN+G
Sbjct: 76  TVDTPAAAAAVPAIREQLDRMGVDVPLVGDFHYNGHKLLQDYPECAQALSKYRINPGNVG 135

Query: 114 N----EERIRSVVECARDKNIPIRIGVNGGSLEKDLM-----DKYKEPTP--------EA 156
                + +   ++E A   N P+RIGVN GSL++DL+     +  +  TP        EA
Sbjct: 136 QGAKRDTQFAQMIEIACRYNKPVRIGVNWGSLDQDLLARIMDENAQRATPWDARAVMVEA 195

Query: 157 LLESAMRHVDILDRLNF--DQFKVSVKASDVFLAVESYRLLAKQIRQPLHLGITEAGGAR 214
           L+ SA++     + L     Q  +S K S V   +  YR LA++    LHLG+TEAG   
Sbjct: 196 LITSAIQSAQKAEELGLPGSQIILSCKVSAVQDLIAVYRELARRCNYALHLGLTEAGMGS 255

Query: 215 AGAVKSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIAC 270
            G V S   L +LL EGIGDT+RISL  +P     +E+ V  +IL+++ +R+     IAC
Sbjct: 256 KGIVASTAALSVLLQEGIGDTIRISLTPEPGAPREKEVIVAQEILQTMGLRNFTPMVIAC 315

Query: 271 PSCSRQEFDVISTVNELERRLEDV--------------TTAMDVSIIGCVVNGPGEALVS 316
           P C R    V     EL  R++                   M+V+++GC+VNGPGE+  +
Sbjct: 316 PGCGRTTSTVF---QELAARIQSYLREQMPKWKTQYPGVEEMNVAVMGCIVNGPGESKHA 372

Query: 317 HIGLT 321
           +IG++
Sbjct: 373 NIGIS 377