Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 438 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Burkholderia phytofirmans PsJN

 Score =  183 bits (465), Expect = 7e-51
 Identities = 133/370 (35%), Positives = 198/370 (53%), Gaps = 47/370 (12%)

Query: 20  VPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTMDAAEAFKLIKQS- 78
           V IG  AP+ VQSMTNT T D   T  QI+ L + G+++VR++V T +AA A   +++  
Sbjct: 45  VTIGGDAPVRVQSMTNTDTADAIGTAIQIKELAQAGSELVRITVNTPEAAAAVPAVREQL 104

Query: 79  ----VSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIGN----EERIRSVVECARD 127
               VSVPLV D H++  + L+      + L   RINPGN+G+    + +   ++E A  
Sbjct: 105 DRMGVSVPLVGDFHYNGHLLLRDYPACAESLSKYRINPGNVGHGAKRDTQFAQMIEAAAK 164

Query: 128 KNIPIRIGVNGGSLEKDLMDKYKEP-----TP--------EALLESAMRHVDILDRLNF- 173
            + P+RIGVN GSL++DL+ K  +      TP        EAL++SA+   +    L   
Sbjct: 165 YDKPVRIGVNWGSLDQDLLAKMMDENAARATPWEAQSVMYEALIQSAIGSAERAVELGLS 224

Query: 174 -DQFKVSVKASDVFLAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGI 232
            +Q  +S K S V   +  YR LA++    LHLG+TEAG    G V S   L +LL +GI
Sbjct: 225 RNQIILSCKVSGVQDLIAVYRELARRCDFALHLGLTEAGMGSKGIVASTAALSVLLQQGI 284

Query: 233 GDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCSR-----------QE 277
           GDT+RISL  +P      E+ VG +IL+++ +RS     IACP C R           Q 
Sbjct: 285 GDTIRISLTPEPGASRTGEVIVGQEILQTMGLRSFTPMVIACPGCGRTTSTLFQELASQI 344

Query: 278 FDVISTVNELERRLEDVTTAMDVSIIGCVVNGPGEALVSHIGL----TGGHRKSGYYDEG 333
              + T   + R        M V+++GC+VNGPGE+  ++IG+    +G +  +  + +G
Sbjct: 345 QTYLRTQMPVWRDQYPGVEKMHVAVMGCIVNGPGESKQANIGISLPGSGENPAAPVFIDG 404

Query: 334 ERQKE-RFDN 342
           E+ K  R DN
Sbjct: 405 EKVKTLRGDN 414