Pairwise Alignments

Query, 395 a.a., PQQ enzyme repeat domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

 Score =  322 bits (825), Expect = 1e-92
 Identities = 163/394 (41%), Positives = 242/394 (61%), Gaps = 10/394 (2%)

Query: 1   MKSWCKNLLAAGLSLAMLSACSSSDVEEEPVSELTAIQATVFPEVSWSASVGDGVGDYYS 60
           MK     +L A   LA+L+ C+S + E   ++ L  +++   P+  WSASVGDGVG Y+S
Sbjct: 1   MKKLFNQVLVAAGVLALLAGCASEE-ENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFS 59

Query: 61  RLTPAVRYGKIFAADRYGAVMAFDEASGEQVWRKDFSEEFRDNALAKNKGARLAAGITAA 120
           +L P   Y K+F A R G V A D  +G+ +W  D   E           ARL+ GITAA
Sbjct: 60  KLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIE---------GSARLSGGITAA 110

Query: 121 RNKLFIGGESGLLAALNAEDGQVLWHVIAGGELLSKPTVADDVVVVSTSSGSLEAYNVDT 180
             KLFIG E+G++ AL+AE G+ LW     GE+L+ P   +++V+V+TS G+L A N + 
Sbjct: 111 FGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQED 170

Query: 181 GAKLWVYDMQLPNLTLRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWEQAIYNPTGG 240
           GA+ W    ++PNLTLRG       AGG F GT  G++A  +   GQ  W+Q +  P G 
Sbjct: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230

Query: 241 NEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRIIWTRKYSSFNELTTAGLSLFL 300
            E  R+ DVD +PL++G  L+ V +NG L++++LR+G+ IW R YSS  ++ T G  L+L
Sbjct: 231 TEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYL 290

Query: 301 VDDHSRIYSVDRRNGLELWSNSELVNRTLTSPEVYKDYLVVGDFEGYLHFIDRSTGSIVG 360
           V D   + +VD R+G ELWSN++L +R LT+P++  DYLVVGD EGYLH+IDR++G  + 
Sbjct: 291 VTDKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIA 350

Query: 361 RIQVDSSGLFSQPIVVDDKIYVQGRSGKLAVVTL 394
           +  V+ SG    P+ ++D   +  R+G++  +T+
Sbjct: 351 QQLVNDSGFAVGPLALNDGYVIVTRNGQIKKLTI 384