Pairwise Alignments

Query, 395 a.a., PQQ enzyme repeat domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 724 a.a., PQQ-dependent dehydrogenase, methanol/ethanol family from Rhodopseudomonas palustris CGA009

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 50/264 (18%)

Query: 45  VSWSASVGDGVGDYYSRLTPAVRYGKIFAADRYGAVMAFDEASGEQVW----RKDFSEEF 100
           + WS S+G   G      TP V  G ++    +  V A D  +G+++W    + D S+ +
Sbjct: 104 LQWSYSLGSERG---VEATPVVVDGIMYVTASWSVVHAIDTRTGKKLWTFDPKVDHSKGY 160

Query: 101 RDNALAKNKGARLAAGITAARNKLFIGGESGLLAALNAEDGQVLWHVIA------GGELL 154
           R      N+G  L  G      K+F+G   G L AL+A  G   W +           + 
Sbjct: 161 RGCCDVVNRGVALYKG------KVFVGAYDGRLIALDAATGSKAWEIDTLIDHEHSYTIT 214

Query: 155 SKPTVADDVVVVST------SSGSLEAYNVDTGAKLWVYDMQLPNLTLRGTGSAAYEAGG 208
             P V +  VV+        + G + AY+ +TG + W +       T+ G  S  +E   
Sbjct: 215 GAPRVFNGKVVIGNGGAEYGARGYVTAYDAETGKQAWRW------FTVPGDPSKPFEDES 268

Query: 209 F--FIGTADGKVAVVVKNNGQAAWEQAIYNP--------TG-GNEFTRMADVDMTPLILG 257
                 T D      +   G  AW+   ++P        TG G+ + R     +     G
Sbjct: 269 MEKAAKTWDPAGKWWLNGGGGTAWDTITFDPDLNLIYVGTGNGSPWNR----HLRSPAGG 324

Query: 258 DNLYAVSYNGNLVSMELRTGRIIW 281
           DNLY  S    +V++   TG+ +W
Sbjct: 325 DNLYLAS----IVALNADTGKYVW 344



 Score = 44.7 bits (104), Expect = 9e-09
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 133 LAALNAEDGQVL---WHVIAGGE--LLSKPTVADDVVVVSTSSGSLEAYNVDTGAKLWVY 187
           L  +N E+ + L   W    G E  + + P V D ++ V+ S   + A +  TG KLW +
Sbjct: 91  LDQINTENVKQLGLQWSYSLGSERGVEATPVVVDGIMYVTASWSVVHAIDTRTGKKLWTF 150

Query: 188 DMQLPN-------LTLRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWE-QAIYNPTG 239
           D ++ +         +   G A Y+ G  F+G  DG++  +    G  AWE   + +   
Sbjct: 151 DPKVDHSKGYRGCCDVVNRGVALYK-GKVFVGAYDGRLIALDAATGSKAWEIDTLIDHEH 209

Query: 240 GNEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRIIW 281
               T    V    +++G+        G + + +  TG+  W
Sbjct: 210 SYTITGAPRVFNGKVVIGNGGAEYGARGYVTAYDAETGKQAW 251



 Score = 38.5 bits (88), Expect = 6e-07
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 14/97 (14%)

Query: 77  YGAVMAFDEASGEQVWRKDFSEEFRDNALAKNKGARLAAGITAARNKLFIGGESGLLAAL 136
           +G ++A+D    ++VWR ++   +    L            T A N +F G   G   A 
Sbjct: 503 FGRLVAWDPVQQKEVWRAEYVSPWNGGTL------------TTAGNLVFQGTADGRFVAY 550

Query: 137 NAEDGQVLWHVIAGGELLSKPT--VADDVVVVSTSSG 171
           NA+ G+ LW    G   ++ P   + D V  VS + G
Sbjct: 551 NAKTGEKLWESPLGTGAVAAPATYMVDGVQYVSIAVG 587



 Score = 35.0 bits (79), Expect = 7e-06
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 24/132 (18%)

Query: 249 VDMTPLILGDNLYAVSYNGNLVSMELRTGRIIWT--------RKYSSFNELTTAGLSL-- 298
           V+ TP+++   +Y  +    + +++ RTG+ +WT        + Y    ++   G++L  
Sbjct: 116 VEATPVVVDGIMYVTASWSVVHAIDTRTGKKLWTFDPKVDHSKGYRGCCDVVNRGVALYK 175

Query: 299 ---FLVDDHSRIYSVDRRNGLELWSNSELVNR----TLT-SPEVYKDYLVVGD------F 344
              F+     R+ ++D   G + W    L++     T+T +P V+   +V+G+       
Sbjct: 176 GKVFVGAYDGRLIALDAATGSKAWEIDTLIDHEHSYTITGAPRVFNGKVVIGNGGAEYGA 235

Query: 345 EGYLHFIDRSTG 356
            GY+   D  TG
Sbjct: 236 RGYVTAYDAETG 247



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 16/73 (21%)

Query: 298 LFLVDDHSRIYSVDRRNGLELWSNS-------------ELVNRTLTSPEVYKDYLVVGDF 344
           +++    S ++++D R G +LW+               ++VNR +    +YK  + VG +
Sbjct: 127 MYVTASWSVVHAIDTRTGKKLWTFDPKVDHSKGYRGCCDVVNRGVA---LYKGKVFVGAY 183

Query: 345 EGYLHFIDRSTGS 357
           +G L  +D +TGS
Sbjct: 184 DGRLIALDAATGS 196



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 158 TVADDVVVVSTSSGSLEAYNVDTGAKLWVYDMQLPNLTLRGTGSAAYEAGGFFIGTADGK 217
           T A ++V   T+ G   AYN  TG KLW   +        GTG+ A  A     G     
Sbjct: 532 TTAGNLVFQGTADGRFVAYNAKTGEKLWESPL--------GTGAVAAPATYMVDGVQYVS 583

Query: 218 VAV 220
           +AV
Sbjct: 584 IAV 586



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 28/141 (19%)

Query: 64  PAVRYGKIFAAD---RYGA---VMAFDEASGEQVWR-----KDFSEEFRDNALAKNKGAR 112
           P V  GK+   +    YGA   V A+D  +G+Q WR      D S+ F D ++ K     
Sbjct: 217 PRVFNGKVVIGNGGAEYGARGYVTAYDAETGKQAWRWFTVPGDPSKPFEDESMEK----- 271

Query: 113 LAAGITAARNKLFIGGESGLLAALNAEDGQVLWHVIAGGE------LLSKPTVADDVVVV 166
            AA       K ++ G  G        D  +    +  G        L  P   D++ + 
Sbjct: 272 -AAKTWDPAGKWWLNGGGGTAWDTITFDPDLNLIYVGTGNGSPWNRHLRSPAGGDNLYLA 330

Query: 167 STSSGSLEAYNVDTGAKLWVY 187
           S     + A N DTG  +W Y
Sbjct: 331 S-----IVALNADTGKYVWHY 346



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 267 GNLVSMELRTGRIIWTRKYSS---FNELTTAGLSLFLVDDHSRIYSVDRRNGLELWSNSE 323
           G LV+ +    + +W  +Y S      LTTAG  +F      R  + + + G +LW  S 
Sbjct: 504 GRLVAWDPVQQKEVWRAEYVSPWNGGTLTTAGNLVFQGTADGRFVAYNAKTGEKLW-ESP 562

Query: 324 LVNRTLTSPEVY 335
           L    + +P  Y
Sbjct: 563 LGTGAVAAPATY 574