Pairwise Alignments

Query, 395 a.a., PQQ enzyme repeat domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 398 a.a., outer membrane protein assembly factor BamB from Dyella japonica UNC79MFTsu3.2

 Score =  222 bits (566), Expect = 1e-62
 Identities = 128/396 (32%), Positives = 210/396 (53%), Gaps = 14/396 (3%)

Query: 8   LLAAGLSLAMLSACSSSDVEEEPVSELTAIQATVFPEVS----WSASVGDGVGDYYSRLT 63
           LL   +S+A L+ C S   ++E V   T +     P       W++SVG G G+   RL 
Sbjct: 5   LLVGLVSMATLAGCHS--FKKENVQPPTPLDKDFKPTAQVSRLWTSSVGKGAGESGLRLR 62

Query: 64  PAVRYGKIFAADRYGAVMAFDEASGEQVWRKDFSEE----FRDNALAKNKGARLAAGITA 119
           PA   G ++ A   G + A D +SG+ +W K  S +    + D    K K A  A G   
Sbjct: 63  PAFADGVLYVASTDGKIEALDASSGKTLWSKSSSTKGWFGWGDK---KRKDAFYAGGPGV 119

Query: 120 ARNKLFIGGESGLLAALNAEDGQVLWHVIAGGELLSKPTVADDVVVVSTSSGSLEAYNVD 179
           + + L IG   G +  +NA+DG   W      E+L+ P V   +V+V T  G L   +  
Sbjct: 120 SGDLLAIGTLDGHVYGINAKDGSPRWESTLSSEVLAAPAVVGGLVIVRTGDGRLYGLDSS 179

Query: 180 TGAKLWVYDM-QLPNLTLRGTGSAAYEAGGFFIGTADGKVAVVVKNNGQAAWEQAIYNPT 238
           +G + W YD   +P L+LRG G      G  F G+ +GK+  +  +NG+  WEQ + +  
Sbjct: 180 SGERRWAYDQGNVPLLSLRGNGPLLAANGVIFFGSDNGKLVALRLDNGEKLWEQNMASGE 239

Query: 239 GGNEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRIIWTRKYSSFNELTTAGLSL 298
           G  E  R+ D D   ++ G  LY  +Y+GNLV+++  +GR +W+R +S+F  +  AG +L
Sbjct: 240 GRTEIDRLNDADGVIVLDGSTLYGAAYHGNLVAVDGPSGRPLWSRPFSTFTSVDVAGNAL 299

Query: 299 FLVDDHSRIYSVDRRNGLELWSNSELVNRTLTSPEVYKDYLVVGDFEGYLHFIDRSTGSI 358
           + V++ S++++ D+  G ++W N +L  R LT+P V  +Y+V  D EGY+H++  S G++
Sbjct: 300 YGVNEDSQVWAFDKSGGADMWKNDKLKYRWLTAPSVQGNYVVAADSEGYVHWLQTSDGAL 359

Query: 359 VGRIQVDSSGLFSQPIVVDDKIYVQGRSGKLAVVTL 394
             R ++    + +QP+VV D +YV+   G++    L
Sbjct: 360 AARERLSKKPIRAQPLVVGDTVYVEDVKGRIGAYRL 395