Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  160 bits (405), Expect = 5e-44
 Identities = 104/364 (28%), Positives = 172/364 (47%), Gaps = 42/364 (11%)

Query: 7   LRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLIT 66
           L +IW  +I    + + V DGFD+GVG L P + +D ++R +M+NT+AP WDGN+ WL+ 
Sbjct: 5   LSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFV-QDSSDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFVG 126
            G  LFAA+P+ Y+V  S  Y+ ++ +L  L  R V F++R K+   + +  WD A   G
Sbjct: 64  GGAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRER-QHVWDKAFIGG 122

Query: 127 GFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMFMMQGAA 186
             V     GV  G  + G+P          Y GG    L PF L  GL  +  + + G  
Sbjct: 123 SLVATFFQGVVLGAFISGLPVE-----DRAYAGGALDWLTPFSLFCGLALIVAYALLGCT 177

Query: 187 WLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAVSNPTLK 246
           WL M+T G+L+ R  +        V V+     +W           + L H  +      
Sbjct: 178 WLMMRTAGDLQRRMHDIGIPLVWAVLVVTGIVSLW-----------TPLTHPDI------ 220

Query: 247 TVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSGFAFLFSSLAVAMVIL-- 304
                A  W +     P  + F  + V + L    + R  +    ++   L +A++ L  
Sbjct: 221 -----AERWFS----MPNLLYFMPVPVLVLLCAFGLLRSIQRYANYMPFLLTLALIFLGY 271

Query: 305 -TCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYFKMF 363
              G +++P ++P    P+VS+  W+A A   +       A++ +P++L YT W+Y+   
Sbjct: 272 SGLGISLWPNIIP----PSVSI--WEAAAPPQSQGFTLVGALLILPLILMYTAWSYYVFR 325

Query: 364 GRLS 367
           G++S
Sbjct: 326 GKVS 329