Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., cyanide-insensitive cytochrome bd quinol oxidase subunit II from Pseudomonas aeruginosa PA14

 Score =  168 bits (426), Expect = 2e-46
 Identities = 108/365 (29%), Positives = 174/365 (47%), Gaps = 46/365 (12%)

Query: 7   LRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLIT 66
           L +IW  +I    + + V DGFD+G+G L P   KD  +R +M+NT+AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGMLYPFF-KDSGDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFVG 126
            G ALF A+P+ YAV  S  Y+ ++ +L  L  R V F++R K + P  +  WD A   G
Sbjct: 64  GGAALFGAFPLAYAVVLSALYLPLIFMLVGLIFRGVAFEFRFKAK-PAKQHIWDKAFIGG 122

Query: 127 GFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMFMMQGAA 186
             V     GVA G  ++G+P         ++ GG    + PF L  GL  +  + + G  
Sbjct: 123 SLVATFFQGVALGAFIEGIPVE-----NRSFAGGSLDWIAPFPLFCGLALIVAYTLLGCT 177

Query: 187 WLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAVSNPTLK 246
           WL MKTEG L+ R  +  +  AL++  +     +W           + L H  +      
Sbjct: 178 WLIMKTEGRLQERMHDLARPLALVLLAIIGVVSLW-----------TPLAHAEI------ 220

Query: 247 TVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRL-----NRSGFAFLFSSLAVAM 301
                A  W      + +  LF  L V + +LV   + L     N     F+ + + + +
Sbjct: 221 -----AARW------FSLPNLFWFLPVPILVLVTFYALLRSVANNDHVKPFVLTLVLIFL 269

Query: 302 VILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYFK 361
                G +++P ++P    P VS+  W+A+A   +   M   A+  +P +L YT W+Y+ 
Sbjct: 270 GYSGLGISLWPNIIP----PAVSI--WEASAPPQSQGFMLVGALFIIPFILGYTAWSYYV 323

Query: 362 MFGRL 366
             G++
Sbjct: 324 FRGKV 328