Pairwise Alignments

Query, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

 Score =  220 bits (560), Expect = 4e-62
 Identities = 146/376 (38%), Positives = 199/376 (52%), Gaps = 104/376 (27%)

Query: 1   MAITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60
           MA+TVNTNV++L AQ++LN+++  L  S+ERLSSG RINSAKDDAAGL ISNRL +Q+RG
Sbjct: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60

Query: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLA 120
           L + +RNAND ISI Q AEGAMQE T +LQRMRDL++QS NG+NS+A+  AL+ EM  L 
Sbjct: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120

Query: 121 NEIDEIGKTTAFGTTK--------------------------------LLAGGFS----- 143
           +E++ I +TT+F   K                                L  GGFS     
Sbjct: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180

Query: 144 ------------------------AGKNFQVGAQDGEDI------------KVTVKASNK 167
                                     +N Q+ A++G+DI            KV+   + K
Sbjct: 181 LADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEK 240

Query: 168 SSLSV--------------GSLGN-----------------TTSAARASSLKKIDAAIKT 196
             L +              GSL N                 +++     ++  ID A+K 
Sbjct: 241 GQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKY 300

Query: 197 IDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSQMTKNQVLQQTGSA 256
           +D  R++LGA+QNR  H ISN  N   N+A + SRI D D+AKET+QM K Q+LQQ  ++
Sbjct: 301 VDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTS 360

Query: 257 MLAQANQLPQVALSLL 272
           +LAQA + P+  L LL
Sbjct: 361 VLAQAKRQPKFVLFLL 376