Pairwise Alignments

Query, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 558 a.a., flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) from Pseudomonas stutzeri RCH2

 Score =  206 bits (523), Expect = 3e-57
 Identities = 160/554 (28%), Positives = 274/554 (49%), Gaps = 34/554 (6%)

Query: 18  GGVDMMRQITM--ILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKNKI 74
           GG+ +  ++T+  +  +A  LA+AV   +W     +RPL G  E+    +V+ +LD   +
Sbjct: 12  GGLQLDPRVTLAGMAVIAAALAVAVAFYLWRDNGSFRPLHGAGESFPAAEVMQILDGEAL 71

Query: 75  KYQIDVDV--VKVPEDKYQEVKMMLSRAGIDSAATSKQDFLTQDSGFGVSQRMEQARLKH 132
           +Y+I      + V ED+  + +++L+  G+  A  +  +   ++   G SQ ++  RLK 
Sbjct: 72  QYRIHPQSGQILVREDQLAQARLLLNAKGVKVAQPAGYELFDKEEPLGTSQFVQDVRLKR 131

Query: 133 SQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPS-ATVVINTRRG-GLGQGEVDA 190
           S E  LAR +  L+ V +A+V LA  + + F  +   PS A+V++    G  L   +V A
Sbjct: 132 SLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQLEPGYKLSSDQVGA 191

Query: 191 IVDIVASAVQGLEPSRVTVTDSNGRLLNSG-SQDGVSARARRELELVQQKETEYRTKIDS 249
           IV++VA++V  L+P  V V D  G LL+ G +  G  A+  + +E  QQK       I+ 
Sbjct: 192 IVNLVANSVPNLKPEDVGVVDQYGALLSRGLNVGGGPAQNWQAVEDYQQKAAG---NIEQ 248

Query: 250 ILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIPGAL 309
           +L+P+LG  NF   V   +DF+  E+T + +  D P LR+E+    ++      G+PG+L
Sbjct: 249 VLAPVLGLGNFRISVAADIDFSQKEETFQSYG-DTPRLRNEVLRNESALDRLALGVPGSL 307

Query: 310 SNQPPMESNIPQEAATAATESVAAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSVAV 369
           SN+P       +EA   ATE+  A +   E+TR  + D ++ H +     +R+ SV+V +
Sbjct: 308 SNRPLPPEPDGEEAQQLATENKGATSLREESTRQMDYDQSVVHVKHAGFALRQQSVAVVL 367

Query: 370 DFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPF--MDQLVED 427
           +    AA   G     AR E E      ++  AVGF  +RGD+L +  +PF  ++Q+ + 
Sbjct: 368 N---SAAAPKGGWTDEARAEMEA-----MVRNAVGFKQERGDLLSLSVLPFAAVEQIEQV 419

Query: 428 VPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDRVNMPEDGRLGNELAE 487
           VP    WE        K+GV  L+ L+L+L VVRP ++ L   +   +P+   L   L E
Sbjct: 420 VP---WWENSQIHALAKVGVAGLIALLLLLIVVRPAVRNLTQRNVQALPQGEGLEGSLVE 476

Query: 488 IEDQYAAD-----TLGMLNTKEAEYSYADDGSILIPNLHKDDD----MIKAIRALVANEP 538
                A +      L         + + +   +    L          I+ ++ L  N+P
Sbjct: 477 PSAPAALEGDARPALASPRESNGPHIFGELNPLSEIRLPAPGSGLELQIEHLQMLAKNDP 536

Query: 539 ELSTQVVKNWLQDN 552
           E  ++V+K+W+  N
Sbjct: 537 ERVSEVIKHWIGRN 550