Pairwise Alignments

Query, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 594 a.a., flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) from Pseudomonas stutzeri RCH2

 Score =  299 bits (766), Expect = 2e-85
 Identities = 194/572 (33%), Positives = 316/572 (55%), Gaps = 44/572 (7%)

Query: 14  LGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKN 72
           L NL  + M+RQ+ +++ LA  +A+   V++W+Q+P+YRPL G +   +  QV++ L   
Sbjct: 27  LENLSDMSMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLLGSLAGMDANQVMETLAAA 86

Query: 73  KIKYQIDVD--VVKVPEDKYQEVKMMLSRAGIDSAATSKQ-DFLTQDSGFGVSQRMEQAR 129
            I Y ++ +   + V  +     ++ L+ AGI  A ++   + L +D G G SQ ME  R
Sbjct: 87  DIAYTVEPNSGALLVKANDLARARLKLASAGIAPADSNIGFEILDKDQGLGTSQFMEATR 146

Query: 130 LKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRG-GLGQGEV 188
            +   E  L R I  L +V  A+V LA+PK +VF R+  +PSA+V++    G  L   +V
Sbjct: 147 YRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPSQV 206

Query: 189 DAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKID 248
            AI+++VA++V  L  S++TV D  G LL+   +    + A ++ +  ++ E+ Y  ++ 
Sbjct: 207 MAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQRVH 266

Query: 249 SILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTV-ENNSTGGSTGGIPG 307
           +IL P+LG   + ++V   +DF+AVE T++ FNPD P+LRSE +V E   +     G+PG
Sbjct: 267 NILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQSSLPPQGVPG 326

Query: 308 ALSNQPPMESNIPQEA--ATAATESVAAG--------------------------NSHRE 339
           ALSNQPP  +  P++A  A AA  +VA G                          +   +
Sbjct: 327 ALSNQPPGPAAAPEQANQAAAAAGAVAPGQPLLDANGQQIMDPATGQPMLAPFPADKREQ 386

Query: 340 ATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLL 399
           ATRN+ELD +IS+T+QQ G +RR+SV+V VD +       G++ RV  T  +L    RL+
Sbjct: 387 ATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQM-TLNAAGEMVRVPWTADDLARFTRLV 445

Query: 400 EGAVGFSAQRGDVLEVVTVPFM-DQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILA 458
           + +VGF A RGD + V+   F+ D   E       + QPWFW  VK  +G L ILVL+  
Sbjct: 446 QDSVGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVVKQVLGVLFILVLVFG 505

Query: 459 VVRPMLKRLIYPDRVNMPEDGRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIP 518
           V+RP+LK L  P   +  ++ ++ N   ++ D+   ++ G+ N +    S +   +IL+P
Sbjct: 506 VLRPVLKSLTNP---SSGKELQVANGPGDLGDEEGLES-GLSNDR---VSLSGPQNILLP 558

Query: 519 NLHKD-DDMIKAIRALVANEPELSTQVVKNWL 549
           +  +  +  + AI+ LVA++P    QVVK W+
Sbjct: 559 SPSEGYEAQLNAIKNLVADDPGRVAQVVKEWI 590