Pairwise Alignments

Query, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 565 a.a., flagellar basal-body MS-ring/collar protein FliF from Dyella japonica UNC79MFTsu3.2

 Score =  246 bits (629), Expect = 1e-69
 Identities = 176/548 (32%), Positives = 274/548 (50%), Gaps = 30/548 (5%)

Query: 24  RQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKNKIKYQIDVD- 81
           RQ+ +++A+A  +A  V V++W++ P Y  L   +++++   +   L  +   YQ+  D 
Sbjct: 29  RQLLLLVAVAAAVAFGVAVVLWSRGPNYALLYAGLDSKDASAITQALQASNTPYQLGPDG 88

Query: 82  -VVKVPEDKYQEVKMMLSRAGI-DSAATSKQDFLTQDSGFGVSQRMEQARLKHSQEENLA 139
             + VP      V++ L+  G+   +A +       DS FG+S   E+ R +   E +L 
Sbjct: 89  ASISVPAADLPAVRLRLAAQGLPQGSAGTSATVPGADSPFGMSDLAERTRYQQMLETDLG 148

Query: 140 RAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGG-LGQGEVDAIVDIVASA 198
             I  LQSV  A+V LALPK + F R+  Q SA+V++    G  L   +V AIV +VAS+
Sbjct: 149 NTIAGLQSVRAARVHLALPKPSAFIRDNKQASASVLVTLFPGRQLDASQVAAIVHLVASS 208

Query: 199 VQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKIDSILSPILGHD 258
           V  L+P +V+V D  G+LL     D  SA     L L  + E  Y  +I+ +L+P++G  
Sbjct: 209 VPELDPRQVSVVDQQGQLLTVSDPDNPSAVGDSRLRLATRMENTYAQRIEELLTPLVGPG 268

Query: 259 NFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSE-MTVENNSTGGSTGGIPGALSNQPPMES 317
              +QV   +DF+  E+  + FN D P+LRSE ++ E    G S G +PGALSNQPP   
Sbjct: 269 KVRAQVYADLDFSQTEKATETFNHDNPALRSEQVSSEQRRDGSSNGAVPGALSNQPPTTV 328

Query: 318 NIPQEA---ATAATESVAA--------GNSHREATRNFELDTTISHTRQQIGVVRRVSVS 366
             P  A   A AA  S  A        G S   ATRN+ELD T+SH     G + R++V+
Sbjct: 329 AQPTAAKPNAGAANASANATTANANSGGESSSSATRNYELDRTVSHVSDPAGRLARLTVA 388

Query: 367 VAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQL-V 425
           VAVD K     + G    V  T QEL ++  L + AVGF+ QRGD + V+  PF      
Sbjct: 389 VAVDNK-ATTDDKGNNKSVPFTAQELEHLTDLAKNAVGFNQQRGDSVTVINQPFHKAPGN 447

Query: 426 EDVPAPELWEQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDRVNMPEDGRLGNEL 485
           E +P    W++P     +K G G LV L++   ++RP+L+ +           G  G  L
Sbjct: 448 EPLPETPFWQRPGVMDLIKQGGGVLVALIIAFGLLRPLLRGVF---------KGTPGTAL 498

Query: 486 AEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVV 545
             +       T+  +   +A+   A  G +  P     +  +   + +V   P+   QVV
Sbjct: 499 QALPAGAGIPTVS-VRIDDADDDMA-PGRLGPPPGMNYEARVAMAKRMVTENPKQVAQVV 556

Query: 546 KNWLQDNG 553
           ++W+ ++G
Sbjct: 557 RSWVSEDG 564