Pairwise Alignments

Query, 527 a.a., flagellar hook-length control protein FliK (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 674 a.a., flagellar hook-length control protein FliK from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (281), Expect = 3e-29
 Identities = 126/518 (24%), Positives = 214/518 (41%), Gaps = 55/518 (10%)

Query: 36  LASVVSVSDAPTKSNLSKDTPVKSGQPESSTDEDHAEDATDINLIF--------AQIGMA 87
           L  +   + A  K+N  K  P + GQ   S   D   +AT    +         +   ++
Sbjct: 186 LGRLQEANQALIKTN-GKILPAQHGQALDSQHPDRIRNATPPEAVLPIESATAISNRALS 244

Query: 88  NEMKKAAATGDALPLEAQLTAIEDAASSLSVLA-----EGGSLPAEEATFLDELAKFAEP 142
                 AA  D+   E ++   E  AS+L   A      G SL A      + +      
Sbjct: 245 TSADLDAAVSDSAATEDEIAQDEWMASALMGGALVGGLSGASLAAANTVHAEPVEGAMLE 304

Query: 143 GKDSHVSVTADAAVMTQSVNQTSTSEADSGLANQTKTEQGTVQ-TSLQLSQQASSTNESE 201
           G     +    AA+ + S   +    A S     T   Q  +   S+   +  + +  + 
Sbjct: 305 GMPLTQTFANTAALASPSAEVSEALAASSQALKATPLTQSALNPASIMADEGLNQSTSAT 364

Query: 202 LTESINVLTSTANTDISDKTGLLDDVEAILGSKEDELNGKSI----NVSTQVAEKTITPT 257
            T  + +   T     ++   L  +++A+L     E  GK+     N   Q   + +TP 
Sbjct: 365 ETGKVVIPWGTQMPTDNELAALTPELKAML-----EEGGKAKAPVPNALAQSVAQGLTPA 419

Query: 258 VDHLASNKTTNASATDTQGLSVNMATGVN--SKEPNTLGAVPVDPNASDDNPSRAEISAG 315
             HLA+ +T     T    ++   AT ++  +  P T+   P+   A+  NP  A  SA 
Sbjct: 420 --HLAAQQT----GTTALPMNPTAATPIDIAALAPQTVAVNPMLNPAATVNPELAASSAM 473

Query: 316 LLLKDAKLAVALDERQDNTLPSLETGSEKSSAEFKPVEFKAVSTLHAITNQQVHRQEISP 375
           L     +     DER+  +    E+G E  + +       A +      NQ ++R E   
Sbjct: 474 LAALGGRALAGSDERRAVS----ESGQEDLAQQIA-----AAAGQGTAQNQALNRAESQL 524

Query: 376 VQLSLRQGVENQNQMQEMIQRFSPVMKQQLVTMVSQGIQQAEIRLDPPELGHMLVKIQVH 435
           VQ +      N+    + +        +++  M+S+ ++  +IRLDPPELG M +++ + 
Sbjct: 525 VQTNATPVPLNKEMAADQLA-------ERVQMMMSKNLKNIDIRLDPPELGRMHIRMNMQ 577

Query: 436 GDQTQVQFHVAQSQTRDLVEQAIPRLRELLQEQGMQLADSHVSQGDQGQRR------EGG 489
           GD   V F VA    R+ +EQ +PRLRE+L +QG+QL D+ V Q   GQ++      + G
Sbjct: 578 GDGATVHFTVANQHAREALEQTMPRLREMLAQQGVQLGDTSVQQQSAGQQQRYTGQEQSG 637

Query: 490 FGEAGGSSGGNVDDFSAEELDLGLNQATSLNSAIDYYA 527
           FG++  +   N ++    ++ L LN AT     I YYA
Sbjct: 638 FGQSARNERLNSEENLDTDIKLDLNVATK-RDGISYYA 674