Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 323 a.a., flagellar motor switch protein FliM from Pseudomonas stutzeri RCH2

 Score =  423 bits (1088), Expect = e-123
 Identities = 201/321 (62%), Positives = 262/321 (81%), Gaps = 1/321 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           + DLLSQDEIDALLHGVDD   D E D+     +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 3   VQDLLSQDEIDALLHGVDDGLVDTESDSEPGSIKSYDLTSQDRIVRGRMPTLEMINERFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R+ RISMFN++RR+A+VS+ GVQ++KFGEYVH+L+VPTSLN+V+  PL+GTAL  ++A+L
Sbjct: 63  RYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L   F D K+AW  V+DV F+Y++S
Sbjct: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDVNFEYVNS 181

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPA+ANIVSP+EVVV+++FHIE+D GGGD H+TMPYSMIEPIRE+LDAG QSD  D D
Sbjct: 182 EVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGFQSDVSDQD 241

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW +AL ++I+DV V   ATVV  +L L+D++N + GD+IP+E+PE ++MR   +P ++
Sbjct: 242 ERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDMIMRANGMPAFK 301

Query: 301 CKMGRSRDNLALKIYEKIPRP 321
            K+G  + NLAL++ E + RP
Sbjct: 302 VKLGAHKGNLALQVLEPVVRP 322