Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 337 a.a., Flagellar motor switch protein FliM from Xanthomonas campestris pv. campestris strain 8004

 Score =  328 bits (841), Expect = 1e-94
 Identities = 164/324 (50%), Positives = 226/324 (69%), Gaps = 20/324 (6%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           +SDLLSQDEIDALLHGVD    + E + +  EAR YD SSQDRI+RGRMPTLE+VNERFA
Sbjct: 3   VSDLLSQDEIDALLHGVDSGAVNTEPEPLPGEARQYDLSSQDRIIRGRMPTLEMVNERFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R  RI +FN++RR+A++S+ G+ ++KF EY+H+L+VPT+LN++RF PL+GT LI  E  L
Sbjct: 63  RLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF +VDNFFGGDGRFH +IEGREFT TE R++QL+LK  F D K+AWAPVMDV+F+Y++S
Sbjct: 123 VFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVDFEYINS 182

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGG-GDFHITMPYSMIEPIRELLDAGV------- 232
           E+NP  ANIV+P E VV+  FH+E++GGG  D H             +LDAG        
Sbjct: 183 EINPHFANIVTPREYVVVCRFHVELEGGGRRDPHHP----------AVLDAGADPRTARR 232

Query: 233 --QSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIM 290
             QSD+ D D  W+  L +++   +V   + +    ++L+ +   K GDI+PI+LP  + 
Sbjct: 233 RHQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP 292

Query: 291 MRIEDLPTYRCKMGRSRDNLALKI 314
           + +E++P +  + G S  N A+KI
Sbjct: 293 LCVEEIPLFTGEFGVSNGNNAVKI 316