Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

 Score =  506 bits (1302), Expect = e-148
 Identities = 240/329 (72%), Positives = 293/329 (89%), Gaps = 1/329 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDV-EEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERF 59
           M+DLLSQDEIDALLHGVD V EE+ EL   G  A ++DFSSQDRIVRGRMPTLE++NERF
Sbjct: 1   MTDLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERF 60

Query: 60  ARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEAR 119
           ARHLRIS+FNM+R+ AEVSINGVQM+KFGEY +TL+VPTSLNMVRF PLKGTAL+TMEAR
Sbjct: 61  ARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEAR 120

Query: 120 LVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLD 179
           LVFILV+NFFGGDGR+HA+IEGREFTPTERR++QLLLKI+F DYK+AW+PVM VEF+YLD
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLD 180

Query: 180 SEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDT 239
           SEVNP+MANIVSPTEV+V++SFH+EVDGGGGDFH+ MPYSM+EPIRELLDAGVQSDK +T
Sbjct: 181 SEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMET 240

Query: 240 DMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTY 299
           D+RWS AL +EIMDV V F   ++E ++ L+D+M  + GD+IPI++PE+ +M +E+LPTY
Sbjct: 241 DVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTY 300

Query: 300 RCKMGRSRDNLALKIYEKIPRPETVKSEL 328
           R KMGRS + LA+++ EKI RP+ VK++L
Sbjct: 301 RVKMGRSGEKLAVQVSEKIKRPDVVKTDL 329