Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas syringae pv. syringae B728a

 Score =  403 bits (1035), Expect = e-117
 Identities = 188/320 (58%), Positives = 255/320 (79%), Gaps = 1/320 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           + DLLSQDEIDALLHGVDD     + ++     +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 3   VQDLLSQDEIDALLHGVDDGMVQTDNNSEPGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R+ RISMFN++RR+A+V++ GVQ++KFGEYVH+L+VPTSLN+ +  PL+GTAL  ++A+L
Sbjct: 63  RYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L   F D K+AW  +M+V F+Y++S
Sbjct: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVNFEYINS 181

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPAMANIV P+E VVI++FHIE+DGGGGD H+TMPYSMIEPIRE+LDAG QSD  D D
Sbjct: 182 EVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQD 241

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW  AL ++++DV V    T+ + +L L+D+++ + GD+IP+EL + ++MR   +P+++
Sbjct: 242 ERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDSLVMRANGVPSFK 301

Query: 301 CKMGRSRDNLALKIYEKIPR 320
            K+G  +  +AL++ E I R
Sbjct: 302 VKLGSHKGKMALQVIEPIAR 321