Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 384 a.a., flagellar motor switch protein FliM (NCBI) from Rhodospirillum rubrum S1H

 Score =  153 bits (386), Expect = 8e-42
 Identities = 94/323 (29%), Positives = 168/323 (52%), Gaps = 9/323 (2%)

Query: 4   LLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFARHL 63
           +L+QDEID+LL G  + E D+  D  G +A      S   +   R+P LE+V +R  R +
Sbjct: 68  VLNQDEIDSLL-GFSEAE-DSGTDKSGIQA----IISTALVSYERLPMLEVVFDRLVRMM 121

Query: 64  RISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFI 123
             S+ N      EVS++ +Q  +FG+Y++++ +P  L++ +        L+T+++ +++ 
Sbjct: 122 STSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYS 181

Query: 124 LVDNFFGGD-GRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEV 182
           +VD   GG  G    +IEGR +T  ER +V+ L+ ++  D   A+ P+  V F +   E 
Sbjct: 182 IVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFRFDRLET 241

Query: 183 NPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMR 242
           NP  A I  P+   ++    I+++  GG   + +PY+ +EP+RELL      +K   D  
Sbjct: 242 NPRFATISRPSNAAIVAKLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDSI 301

Query: 243 WSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIEL--PEYIMMRIEDLPTYR 300
           W   L +E+   +V  DA + E  + L  +++ + G  I         + +R  D+P + 
Sbjct: 302 WETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPMFD 361

Query: 301 CKMGRSRDNLALKIYEKIPRPET 323
            KMGR   N+A+++  K  R ++
Sbjct: 362 GKMGRKGQNIAIRVDSKHNRAKS 384