Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., flagellar motor switch protein FliM from Rhodopseudomonas palustris CGA009

 Score =  155 bits (393), Expect = 1e-42
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 17/340 (5%)

Query: 4   LLSQDEIDALLH---GVDDVEEDNELDAVGQEAR-SYDFSSQDRIVRGRMPTLEIVNERF 59
           +LSQ+EID LL    G   ++E++ + A+   A  SY+          R+P LEIV +R 
Sbjct: 66  VLSQEEIDNLLGFSVGEVHLDENSGIRAIIDSAMVSYE----------RLPMLEIVFDRL 115

Query: 60  ARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEAR 119
            R +  S+ N      EVS++ +  ++FG+Y++++ +P  L + +    +   L T+++ 
Sbjct: 116 VRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSS 175

Query: 120 LVFILVDNFFGGD-GRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYL 178
           L++ ++D   GG  G+   +IEGR +T  E  +V+ LL+++  D + A+ P+  V F   
Sbjct: 176 LIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFSID 235

Query: 179 DSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQD 238
             E NP  A I  P    ++   HI+++  GG+  + +PY+ IEPIR +L      +K  
Sbjct: 236 RLETNPRFAAISRPANAAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFG 295

Query: 239 TDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIEL--PEYIMMRIEDL 296
            D  W   L  EI+   +  DA + E EL L+ +M  + GD +P+EL     + +R   +
Sbjct: 296 RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSV 355

Query: 297 PTYRCKMGRSRDNLALKIYEKIPRPETVKSELQLVTRKGK 336
                +MGR  D +A+++ + + +P T  +  +    + K
Sbjct: 356 VLTEGRMGRVGDRVAIRVTKPLRKPLTTYAMFERTDEQSK 395